PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g17490
Common NameGSCOC_T00036406001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 262aa    MW: 30065.2 Da    PI: 7.0088
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g17490genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-134486754
                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                   Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  Cc06_g17490 44 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 86
                 57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-1837103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.6983786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.60E-134091No hitNo description
SMARTSM003532.4E-154392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-1743104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-114486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDDVWENMFL QTDELDSYLD ESFSYYDSSS PEGAQSSAAS KNIVSERNRR KKLNERLFAL  60
RAVVPNISKM DKASIIKDAI DYIQELHNQE RMIQAEISEL ESKRSIFLDF DQEISYNSKP  120
KRSRFEQTCD SAGSRSSPIE VLELRVSHMG EKTIVVSLTC SKRTDTMVKI CEVFESLNLK  180
IITANITAFS GRLLKTVFLE VRSSFCQVNF FSSFISLIFA VNPQFFALSI EREREKKKVN  240
FNLFSCHVHL SHQAKNLCYL N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-1442106971Transcription factor MYC2
5gnj_B9e-1442106971Transcription factor MYC2
5gnj_E9e-1442106971Transcription factor MYC2
5gnj_F9e-1442106971Transcription factor MYC2
5gnj_G9e-1442106971Transcription factor MYC2
5gnj_I9e-1442106971Transcription factor MYC2
5gnj_M9e-1442106971Transcription factor MYC2
5gnj_N9e-1442106971Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027069893.11e-143transcription factor bHLH35-like
RefseqXP_027149611.11e-143transcription factor bHLH35-like
RefseqXP_027176818.11e-143transcription factor bHLH35-like
SwissprotQ2HIV92e-70BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A068UWC80.0A0A068UWC8_COFCA; Uncharacterized protein
STRINGVIT_11s0052g00100.t011e-101(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.41e-75bHLH family protein