PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g16930
Common NameGSCOC_T00004149001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NF-YA
Protein Properties Length: 145aa    MW: 16578.8 Da    PI: 10.3618
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g16930genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.83.7e-331470158
    CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                 +ep+YVNaKQy++Il+RRq Rak+e e+k+ +k+rkpylheSRh hA+rR+Rg+gGrF
  Cc06_g16930 14 EEPVYVNAKQYHGILRRRQLRAKAELENKV-AKARKPYLHESRHLHAMRRARGCGGRF 70
                 69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.8E-361273IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.8181373IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.7E-291570IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.1E-241638IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068601838IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.1E-244770IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MHDSRLALPL ELAEEPVYVN AKQYHGILRR RQLRAKAELE NKVAKARKPY LHESRHLHAM  60
RRARGCGGRF LSKKNVDKSD SRAASKKSID FNATPTEMKD SLGSQHPFSS TSQKSCNEVK  120
GFLLQEMQNT NTFEWGYQYH CKTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-231477265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066119.11e-106nuclear transcription factor Y subunit A-4-like isoform X5
SwissprotQ84JP14e-33NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
SwissprotQ945M95e-33NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A068VCV41e-105A0A068VCV4_COFCA; Uncharacterized protein
STRINGXP_010257210.12e-41(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112322025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.11e-29nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]