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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc06_g16130 | ||||||||
Common Name | GSCOC_T00030734001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | G2-like | ||||||||
Protein Properties | Length: 484aa MW: 54045.8 Da PI: 6.9736 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.7 | 9.9e-32 | 309 | 363 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt+eLH+rFve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR Cc06_g16130 309 KTRIRWTQELHDRFVECVNHLGGADKATPKAILKLMEWEGLTIFHVKSHLQKYRN 363 68****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.448 | 306 | 366 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.97E-17 | 307 | 363 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.8E-28 | 308 | 364 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-24 | 309 | 364 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.6E-8 | 313 | 362 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 8.4E-18 | 393 | 440 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MPSVLFATAY SSKEFVNKKD RFPTVISCNF GLDNFSGTHL LLLFLVQSFE LLHLTSIIII 60 PSMNIQKIGS YERMLQNCGH TSDYASEFSY RFPQSFGNPP EASDMGLCFQ SADRDEGSQR 120 QNFWPNNSSS TIMGQIGSAS AFYAAEVYMG LTQLGARDNQ STCSTQLSKI NHDVHIPSYD 180 QSENCLFTDS PPRKLEPCSF PANTTLQAVP NSQTSNSQYI SSEASYRHPF SDLTEKERLW 240 QLKKKLLGDV DNPNKRQHTM PLQRNQDVGV SCNLYDPHFP NVKPSGRSSG CISPISTNPA 300 SAAGAVTNKT RIRWTQELHD RFVECVNHLG GADKATPKAI LKLMEWEGLT IFHVKSHLQK 360 YRNAKYIPAS AEGKSDKGPC TSNEAQIDIK NGMQLKEALQ LQLDVQRRLH DQLEVQRKLQ 420 LSIEEQARQL KLILDKQQET AKSLLETQNS AITSPTYLST TLENVDILIS EDSESTPFSS 480 KIS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-23 | 309 | 366 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-23 | 309 | 366 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-23 | 309 | 366 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-23 | 309 | 366 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-23 | 309 | 366 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-23 | 309 | 366 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-23 | 309 | 366 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-23 | 309 | 366 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027066737.1 | 0.0 | myb family transcription factor PHL5-like | ||||
TrEMBL | A0A068UPE8 | 0.0 | A0A068UPE8_COFCA; Uncharacterized protein | ||||
STRING | XP_009603787.1 | 1e-115 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2491 | 24 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 2e-64 | G2-like family protein |