PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc06_g15180 | ||||||||
Common Name | GSCOC_T00030868001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 448aa MW: 46370.7 Da PI: 6.9298 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37 | 6.2e-12 | 231 | 276 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Cc06_g15180 231 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 276 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.28E-17 | 224 | 285 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.14E-13 | 224 | 280 | No hit | No description |
PROSITE profile | PS50888 | 17.39 | 226 | 275 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-16 | 228 | 285 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-9 | 231 | 276 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-13 | 232 | 281 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048767 | Biological Process | root hair elongation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MQAMNSLLNQ QLHDLQNGQQ QQHHHHFDST TSSHDDFLEQ MLSSISTASW PAPDLIKTQP 60 PWDPLSQTPL GSLEDQSVLL ANKLRQHQIG GAKALMLHQQ LMLPRGLAGN GLRSPPGPNG 120 GLLAMPPLNL AGNGDQNEVI VDGSPFKSAN PGNDASVQAL YNGFTGQAST QPQHFHHPQG 180 GAMQAQNFGA QAMNQAAASG SMGTAGGGGT AAAQPRQQRV RARRGQATDP HSIAERLRRE 240 RIAERMKALQ ELVPNANKTD KASMLDEIID YVKFLQLQVK VLSMSRLGGA VAPLAADMSS 300 EGGGDCGNGR SSNGTQTASS SNNNNNDGMT VTEHQVAKLM EEDMGSAMQY LQGKGLCLMP 360 ISLATAISTA TCHSRNPMHP GLTGNGANNP LLGLGGGASG NGVGEAGGPS SPSMSVLTVQ 420 SATMVNGGGG PGGEPSSVKD AASVSKP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 235 | 240 | RLRRER |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00659 | PBM | Transfer from Pp3c14_15890 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027067899.1 | 0.0 | transcription factor bHLH66-like | ||||
Swissprot | Q9ZUG9 | 3e-95 | BH066_ARATH; Transcription factor bHLH66 | ||||
TrEMBL | A0A068UPR8 | 0.0 | A0A068UPR8_COFCA; Uncharacterized protein | ||||
STRING | VIT_11s0037g00040.t01 | 1e-149 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3759 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 5e-64 | LJRHL1-like 1 |
Publications ? help Back to Top | |||
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