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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cc06_g12880 |
| Common Name | GSCOC_T00041480001 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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| Family |
HD-ZIP |
| Protein Properties |
Length: 180aa MW: 20029.8 Da PI: 10.0073 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cc06_g12880 | genome | CGSC | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.2 | 3.3e-19 | 55 | 108 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+ +++keq +Le+ F+ +++p+++ + eLA++lgL rqV +WFqNrRa+ k
Cc06_g12880 55 KKSRLSKEQAAVLEANFNDHPNPDTALKNELADRLGLFPRQVDIWFQNRRARTK 108
56789***********************************************98 PP
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| 2 | HD-ZIP_I/II | 90.3 | 2.3e-29 | 55 | 141 | 2 | 88 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88
kk rlskeq+++LE +F+ + + ++ K+ela +Lgl prqv++WFqnrRARtk+k+ +++e+Lk+ +++l een +L++e e+ +
Cc06_g12880 55 KKSRLSKEQAAVLEANFNDHPNPDTALKNELADRLGLFPRQVDIWFQNRRARTKSKKNVSECERLKQVCKNLIEENLKLSEEIEKQK 141
9*******************************************************************************9998755 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 180 aa
Download sequence Send
to blast |
MEARENSNTQ LPLALGPRKN TKRGPRKNTK RVLSLELSLG AQQVQGRGSS DENAKKSRLS 60
KEQAAVLEAN FNDHPNPDTA LKNELADRLG LFPRQVDIWF QNRRARTKSK KNVSECERLK 120
QVCKNLIEEN LKLSEEIEKQ KALATGDQKG AFYAYGLSGY VLVCPVCHQQ YLIGSCGAM*
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