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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cc06_g12870 |
Common Name | GSCOC_T00041481001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family |
HD-ZIP |
Protein Properties |
Length: 211aa MW: 23049 Da PI: 9.8705 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc06_g12870 | genome | CGSC | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 63 | 4.3e-20 | 55 | 109 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq+ +Le+ F+k+ +++++++ eLA++lgL+ rqV vWFqNrRa+ k
Cc06_g12870 55 RKKLRLSKEQTAVLEDSFKKHTTLNTAQKIELAARLGLKPRQVEVWFQNRRARTK 109
788899***********************************************98 PP
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2 | HD-ZIP_I/II | 116.9 | 1.1e-37 | 55 | 144 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk+rlskeq ++LE+sF+++++L++ +K ela +Lgl+prqv+vWFqnrRARtk+kq+E+d+e k+++d+l+een +L+ke ++L+ +l
Cc06_g12870 55 RKKLRLSKEQTAVLEDSFKKHTTLNTAQKIELAARLGLKPRQVEVWFQNRRARTKLKQTETDCELWKNHCDNLREENGKLKKEIDDLK-AL 144
69************************************************************************************99.44 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 211 aa
Download sequence Send
to blast |
MVDDDFCNTK LALGIGTSSG NSVPKPDKRA LSLDLSLVDE GQSSRNSEDN GGESRKKLRL 60 SKEQTAVLED SFKKHTTLNT AQKIELAARL GLKPRQVEVW FQNRRARTKL KQTETDCELW 120 KNHCDNLREE NGKLKKEIDD LKALRAAFYA QITNCVGISV CPSCKKVQGV ATKGSSSGDG 180 KHERNATAAA ASGDVVQSPK YKHSGFKIRG *
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 53 | 59 | SRKKLRL |
2 | 103 | 111 | RRARTKLKQ |