PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g11200
Common NameGSCOC_T00041687001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 317aa    MW: 33673.6 Da    PI: 8.2977
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g11200genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-13116160347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
      Cc06_g11200 116 PWTEEEHRSFLVGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 160
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.744109165IPR017930Myb domain
SuperFamilySSF466891.05E-17110166IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-18112164IPR006447Myb domain, plants
SMARTSM007174.9E-10113163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-11113159IPR009057Homeodomain-like
PfamPF002494.0E-11116160IPR001005SANT/Myb domain
CDDcd001678.43E-9116161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGRKCSHCGN IGHNSRTCTA YSSGNISVMA AGLRLFGVQL DVSCNSAPSS SNSNSIAMKK  60
SFSLDCLSSS PTSSPSPSSS LSSSRISIGE NSDKISIGYL SDGLLGRPQE RKKGVPWTEE  120
EHRSFLVGLE KLGKGDWRGI SRNFVTTRTP TQVASHAQKY FLRQASLNKK KRRSSLFDMV  180
GSKNAIVRHQ VFDLSFELNN DTTSANCLSS KASSDLDTAA HLLDLNSFAV DATTNHQDCI  240
EVQEGSSSHH MDIDSMSIWP AASGSSSYQL SNISSITSTT GAPDLELTLA APKTAAQNNP  300
PPPPASILIM GPISVI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168172KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor (PubMed:23888064, PubMed:24806884). Direct regulator of the transcription of peroxidase (Prxs) and reactive oxygen species (ROS)-related genes via the recognition of 5'-ATCACA-3' motif (PubMed:24806884). Binds to 5'-TATCCA-3' motif (TA box) and represses the activity of corresponding promoters (e.g. sugar response genes) (PubMed:25920996). Regulates hypocotyl elongation in response to darkness by enhancing auxin accumulation in a phytochrome-interacting factor (PIF) proteins-dependent manner. Promotes lateral roots formation (PubMed:23888064). Promotes cell expansion during leaves development via the modulation of cell wall-located Prxs (PubMed:24806884). Plays a critical role in developmentally regulated and dark-induced onset of leaf senescence by repressing the transcription of several genes involved in chloroplast function and responses to light and auxin. Promotes responses to auxin, abscisic acid (ABA), and ethylene (PubMed:25920996). {ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by CdCl(2) (PubMed:16463103). Accumulates in the dark (PubMed:23888064, PubMed:25920996). Diurnal expression pattern with maximal levels in the morning (at protein level). Specifically induced during leaf expansion (PubMed:24806884). Expressed in old and dark-treated leaves (PubMed:25920996). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066065.10.0probable transcription factor At5g61620
SwissprotQ9LVS04e-47KUA1_ARATH; Transcription factor KUA1
TrEMBLA0A068U6I00.0A0A068U6I0_COFCA; Uncharacterized protein
STRINGEOY304922e-90(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33852147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.16e-54MYB_related family protein
Publications ? help Back to Top
  1. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]