PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g10850
Common NameGSCOC_T00041727001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 396aa    MW: 43848.2 Da    PI: 6.8826
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g10850genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.6e-08150170526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C++f++ G Ck Gd C FaHg
  Cc06_g10850 150 ACPDFRK-GSCKKGDACEFAHG 170
                  7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.3E-5145171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.554146172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-6149172IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-6150170IPR000571Zinc finger, CCCH-type
SMARTSM003565.5180203IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.648180204IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MMIGERNHPN PVVHVPPWPA SFADDQTADV SMTLSPNANA HSSPSFDDYS FCLQTDVLTA  60
LQRFLPSNLK TSLTDLVLED LDAAENDDGF GKDLDLPVDA YSCDHFRMFE FKVRKCMRGR  120
SHDWTECPYA HPGEKARRRD PRKYHYSGTA CPDFRKGSCK KGDACEFAHG VFECWLHPAR  180
YRTQPCKDGL NCKRRVCFFA HSPEQLRVLS PRADSYDGSP HRLALEASFG KALQFMSSPE  240
SGSPPSESPP MSPMTTSTSM SSLSRSLGSN SVSEIMASLR QLQLNKVQSV PSSWALQAGG  300
SGSGTPRAVM TRPGSYSLPS TPTRTVGRNG MRYFDNWDKG GGEEEPMMER VESGRDLRAK  360
IFQKLSKENP LDWVDPKPSD APPNPDVGWV SDLIQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027068760.10.0zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-123C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A068U6K50.0A0A068U6K5_COFCA; Uncharacterized protein
STRINGXP_009791791.10.0(Nicotiana sylvestris)
STRINGXP_009608132.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-113C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]