PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g09140
Common NameGSCOC_T00041953001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family G2-like
Protein Properties Length: 501aa    MW: 54969.2 Da    PI: 7.7656
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g09140genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.94.7e-28252302151
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                  k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQ
  Cc06_g09140 252 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQ 302
                  68************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.307249309IPR017930Myb domain
SuperFamilySSF466891.31E-12249303IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-23250304IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-23252303IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MASPSELSLD CKPHSYSMLL KSVGEQSDQA HKLEEFLSRL EEERLKIDAF KRELPLCMQL  60
LTNAMEASRQ QLQSYRANQV PKPLLEEFIP LKHPSSEGSD KAPTMSDKAN WMTSAQLWSQ  120
ASDQGTKQQS PVTSPKGTTD IGFGAVNPKQ VLDNKQRNGG GAFHPFSKDR SISCPSHALR  180
AIPDLALASS PDKDHAGDKK IIPESDLRRE SSCRVNNGSG VVLEQGKGAT TGQADSQTNS  240
NPNTTSSQTH RKARRCWSPD LHRRFVNALQ MLGGSQVATP KQIRELMKVD GLTNDEVKSH  300
LQAVHSEPET KYNRHACLHE RLDLYHYPSF VKKYRLHTRR PSPSPQAAVS AAPQLVVLGS  360
IWVPPEYATA AAAAAHGGAP TALYGPHPTT HASAHYCATP VPQEFYPAQT PPPQPPHHQL  420
HHHPLHNQLH VYKPPSQTQS SPESDVRGNG DRSESIEDGK SDSSSWKVDS NGENNAAERK  480
VLVLREDGEE SNGSEITLKF *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066486.10.0myb family transcription factor EFM-like
TrEMBLA0A068U5D00.0A0A068U5D0_COFCA; Uncharacterized protein
STRINGevm.model.supercontig_127.550.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87942229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.18e-83G2-like family protein