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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc06_g08800 | ||||||||
Common Name | GSCOC_T00031085001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 403aa MW: 45464.3 Da PI: 8.2625 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.7 | 7.5e-07 | 142 | 166 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C f+ G Ck G++C++aHg Cc06_g08800 142 YKTRMCAKFSF-GSCKNGEKCTYAHG 166 9*********9.*************8 PP | |||||||
2 | zf-CCCH | 26.3 | 1.3e-08 | 200 | 223 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k++lC+ f+ + +C+yG++C+F H Cc06_g08800 200 KMKLCKKFYNGEECPYGEKCNFLH 223 789*******66************ PP | |||||||
3 | zf-CCCH | 42.9 | 8e-14 | 290 | 316 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ + tG C++G+rC+FaHg+ Cc06_g08800 290 WKTKLCSKWEITGRCPFGERCHFAHGQ 316 8************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-13 | 138 | 174 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.9E-8 | 139 | 172 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.012 | 141 | 167 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.427 | 141 | 168 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.28E-7 | 198 | 225 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0048 | 198 | 225 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.648 | 198 | 226 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-9 | 200 | 225 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-6 | 200 | 223 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-16 | 285 | 319 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.3E-9 | 289 | 316 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-10 | 289 | 320 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.155 | 289 | 317 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.4E-11 | 290 | 316 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MPWATLGNFK KVLGNFRNNH IGLSLKPCHR NKMRFPNPPP PVPPLSPPQP PLPAYTQRPF 60 SDGDVGGFWP GLPLEYPGFP AGFPVNHEDL DLYERFEHAP PPKRPRNSDN NNAVSEPFST 120 LINPRMNPSN PLGSKGTSHI FYKTRMCAKF SFGSCKNGEK CTYAHGIEDM REPPPNWQEF 180 LAEKDGAART WTDDQRLIHK MKLCKKFYNG EECPYGEKCN FLHERRIPSF SSLDERPRSK 240 TDLPMQRESS VISIGTRGSS IGNPSDYDQP EVSRPVDPNM DALRPKTSSW KTKLCSKWEI 300 TGRCPFGERC HFAHGQSELN VSTAQVDVEV TVNSSPFQTK PVSIPVFDSS AANLEVGAPV 360 PEVMQDKNFS WWRPKKKMNK IYADWLDDQT PPHGSPNEVE DR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027066667.1 | 0.0 | zinc finger CCCH domain-containing protein 39-like | ||||
Refseq | XP_027066668.1 | 0.0 | zinc finger CCCH domain-containing protein 39-like | ||||
TrEMBL | A0A068UPL0 | 0.0 | A0A068UPL0_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400065585 | 1e-122 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6553 | 24 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 2e-67 | C3H family protein |