PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g08800
Common NameGSCOC_T00031085001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 403aa    MW: 45464.3 Da    PI: 8.2625
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g08800genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.5e-07142166126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykt+ C  f+  G Ck G++C++aHg
  Cc06_g08800 142 YKTRMCAKFSF-GSCKNGEKCTYAHG 166
                  9*********9.*************8 PP
2zf-CCCH26.31.3e-08200223225
                  -S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                  k++lC+ f+ + +C+yG++C+F H
  Cc06_g08800 200 KMKLCKKFYNGEECPYGEKCNFLH 223
                  789*******66************ PP
3zf-CCCH42.98e-14290316127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +kt+lC+ +  tG C++G+rC+FaHg+
  Cc06_g08800 290 WKTKLCSKWEITGRCPFGERCHFAHGQ 316
                  8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.1E-13138174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-8139172IPR000571Zinc finger, CCCH-type
SMARTSM003560.012141167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.427141168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-7198225IPR000571Zinc finger, CCCH-type
SMARTSM003560.0048198225IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.648198226IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-9200225IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-6200223IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-16285319IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-9289316IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-10289320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.155289317IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-11290316IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MPWATLGNFK KVLGNFRNNH IGLSLKPCHR NKMRFPNPPP PVPPLSPPQP PLPAYTQRPF  60
SDGDVGGFWP GLPLEYPGFP AGFPVNHEDL DLYERFEHAP PPKRPRNSDN NNAVSEPFST  120
LINPRMNPSN PLGSKGTSHI FYKTRMCAKF SFGSCKNGEK CTYAHGIEDM REPPPNWQEF  180
LAEKDGAART WTDDQRLIHK MKLCKKFYNG EECPYGEKCN FLHERRIPSF SSLDERPRSK  240
TDLPMQRESS VISIGTRGSS IGNPSDYDQP EVSRPVDPNM DALRPKTSSW KTKLCSKWEI  300
TGRCPFGERC HFAHGQSELN VSTAQVDVEV TVNSSPFQTK PVSIPVFDSS AANLEVGAPV  360
PEVMQDKNFS WWRPKKKMNK IYADWLDDQT PPHGSPNEVE DR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066667.10.0zinc finger CCCH domain-containing protein 39-like
RefseqXP_027066668.10.0zinc finger CCCH domain-containing protein 39-like
TrEMBLA0A068UPL00.0A0A068UPL0_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000655851e-122(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65532434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-67C3H family protein