PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc06_g06640

Common Name

GSCOC_T00031358001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Dof

Protein Properties

Length: 340aa MW: 37363.4 Da PI: 6.8225

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc06_g06640	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.8	3.6e-36	14	69	7	62
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rk ++++ Cc06_g06640 14 ACPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKGRRRN 69 7**************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-23	1	58	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.425	13	67	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.6E-31	14	67	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	15	51	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MERRWKPNVE ISPACPRCGS SNTKFCYYNN YSLTQPRYFC KGCRRYWTKG GSLRNVPVGG 60 GCRKGRRRNN RTFRDGATTI GIPLRAAVAG DGASSTSSMH ACTFARAREE GSTNIDLALV 120 YANFLNQKSS GAGAHEVDDQ IHEGAAAEPH DRHRLEIPIL MPPNNIAAVG VGGGSSFHQF 180 SSVESLQMMD LMTNNNQLSQ EPFAERGSVS DRSSDNHFSA GDAFYFSGLD SIERQQVATD 240 YDHLTSCATT DTRNALNQIN NYMLPPLPGE ELSTAHSEGM VWSGCCDQEL LFPSHKFHGN 300 QSSSGLVESH VVQDRSNHQL DESRSPFNLS IELCNIFRP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027177383.1	0.0	uncharacterized protein LOC113776431
TrEMBL	A0A068UQL2	0.0	A0A068UQL2_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12963	13	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	5e-36	Dof family protein