PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g06600
Common NameGSCOC_T00031364001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family TALE
Protein Properties Length: 681aa    MW: 73706.3 Da    PI: 7.3804
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g06600genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.13.5e-094184551954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Cc06_g06600 418 FEHflHPYPKDSDKLMLAKQTGLTRSQVSNWFINARVR 455
                  554459******************************88 PP
2BELL118.82.5e-38282353172
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  erqe+q+kkakL+++l+eV++rY+qy++q+q+vis Fe++ag+gsak Yt+lAl++iS++FrcLkdai +qi
  Cc06_g06600 282 ERQEIQMKKAKLVNMLDEVEQRYRQYHNQMQIVISWFEQAAGIGSAKTYTALALQTISKQFRCLKDAILGQI 353
                  79********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.5E-61205351IPR006563POX domain
PfamPF075262.7E-49210349IPR006563POX domain
PROSITE profilePS5007112.147396459IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-28398472IPR009057Homeodomain-like
CDDcd000862.52E-12399460No hitNo description
SMARTSM003892.3E-9399463IPR001356Homeobox domain
SuperFamilySSF466897.27E-17400466IPR009057Homeodomain-like
PfamPF059206.1E-18416455IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MATYFHGNSE IQGGGGDHGL QTLILMNHAG YVGGYSDTHQ PPPHVQVQVQ PPSNFVFLNS  60
SNTPGPSAAP GANSLNVHHA PPPPSPTQQF VGIPLTATAA TSSQDHQPHA ASVQDISALH  120
AFLPRLQYNL YSPAMDLGAA REVSRAQQGL SLSLSSQQPA YGSFRPEREI PSQPLVTAIS  180
PTGGDDLRVS GGSSSSASGI SNGVNGMQSV LLSSKYLKAA QELLDEVVNV GKGVKSGVAT  240
AKGANGQAKE IGESSEMTAT AGEGQNGREN SAKRSAELTT AERQEIQMKK AKLVNMLDEV  300
EQRYRQYHNQ MQIVISWFEQ AAGIGSAKTY TALALQTISK QFRCLKDAIL GQIRAASKSL  360
GEEDSFGGKI EGSRLKFVDN QLRQQRALQQ LGMIQHNAWR PQRGLPERSV SVLRAWLFEH  420
FLHPYPKDSD KLMLAKQTGL TRSQVSNWFI NARVRLWKPM VEEMYTEEMK EHEKNGSEVK  480
TSKSEQNEDS GSKSNALQEK SSSLEIQNKE MDSITQGSPK KLRSADMLHS PSSVPSVSID  540
AKPNESNNEQ LSMKFVNERQ NREGFSLLGA PTNFIGGFGS YPIAEIGRFS SEQFPGPYSG  600
NGVSLTLGLP HCENLSISGP HQNFLPNQNI QLGRGVEIGE ANDYGGLGTP TSSHSTSVYE  660
NINIQNRKRF AAQLLPDFVA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A7e-16405463563Homeobox protein Meis2
3k2a_B7e-16405463563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027067080.10.0BEL1-like homeodomain protein 1
RefseqXP_027067081.10.0BEL1-like homeodomain protein 1
RefseqXP_027067083.10.0BEL1-like homeodomain protein 1
RefseqXP_027067084.10.0BEL1-like homeodomain protein 1
RefseqXP_027067085.10.0BEL1-like homeodomain protein 1
RefseqXP_027067086.10.0BEL1-like homeodomain protein 1
RefseqXP_027067087.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ560.0BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A068UQ860.0A0A068UQ86_COFCA; Uncharacterized protein
STRINGXP_009787672.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14782467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-148BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]