PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 416aa MW: 46583.5 Da PI: 7.4322

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc06_g05860	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.4	1.5e-33	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl Cc06_g05860 45 KPRLKWTPDLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.38	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-31	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.96E-17	44	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.1E-24	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-10	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	7.6E-24	142	188	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MYHHHQQGKN IHSSSRMPIP PERHLFLQGG NGPGDSGLVL STDAKPRLKW TPDLHERFIE 60 AVNQLGGADK ATPKSVLKLM GIQGLTLYHL KSHLQKYRLS KNLHGQANCG TNKAAAGDRI 120 PETNAASIIN PSIGSQANKN LHIGEAIQMQ IEVQRRLHEQ LEVQRHLQLR IEAQGKYLQA 180 VLEKAQETLG RQNLGSVGLE AAKVQLSELV SKMSDQCLNS AFSDMKELPG SCPQQTQTPQ 240 PTDCSMDSCL TSCEGSLRDQ EMHNNQMMLR PLNLRTDMEF NNMNNEASLQ HAERRWCDDL 300 MKEKRKLVST MNEEAEKACA AEKNIGNLSM SIGLQGGRWN SHHSYLEKRG REAETEIKFF 360 DQPHNRYGPI PPETQRPSEE YKLPFFAPKL DLNTDDGADA GSRCKQFDLN GFSWS*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MYHHHQQGKN IHSSSRMPIP PERHLFLQGG NGPGDSGLVL STDAKPRLKW TPDLHERFIE  60
AVNQLGGADK ATPKSVLKLM GIQGLTLYHL KSHLQKYRLS KNLHGQANCG TNKAAAGDRI  120
PETNAASIIN PSIGSQANKN LHIGEAIQMQ IEVQRRLHEQ LEVQRHLQLR IEAQGKYLQA  180
VLEKAQETLG RQNLGSVGLE AAKVQLSELV SKMSDQCLNS AFSDMKELPG SCPQQTQTPQ  240
PTDCSMDSCL TSCEGSLRDQ EMHNNQMMLR PLNLRTDMEF NNMNNEASLQ HAERRWCDDL  300
MKEKRKLVST MNEEAEKACA AEKNIGNLSM SIGLQGGRWN SHHSYLEKRG REAETEIKFF  360
DQPHNRYGPI PPETQRPSEE YKLPFFAPKL DLNTDDGADA GSRCKQFDLN GFSWS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-22	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-22	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-22	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-22	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-22	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-22	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-22	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-22	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-22	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-22	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-22	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-22	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027065684.1	0.0	myb-related protein 2-like isoform X1
Refseq	XP_027156141.1	0.0	myb-related protein 2-like isoform X1
Refseq	XP_027173590.1	0.0	myb-related protein 2-like isoform X1
Swissprot	Q9SQQ9	1e-137	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A068V4H4	0.0	A0A068V4H4_COFCA; Uncharacterized protein
STRING	XP_009630167.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2946	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-131	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]