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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cc06_g05330 |
| Common Name | GSCOC_T00043079001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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| Family |
Trihelix |
| Protein Properties |
Length: 527aa MW: 59711.9 Da PI: 7.7142 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cc06_g05330 | genome | CGSC | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 94.8 | 8e-30 | 104 | 189 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea
Cc06_g05330 104 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 189
8*************************************999*****************************98..55667*******85 PP
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| 2 | trihelix | 56.9 | 5.6e-18 | 405 | 475 | 2 | 71 |
trihelix 2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71
W + e+ +Li++r++me r+++ g+ ++ lWee+++km+ g+ r+p +Ck+kw++++ + k+ + +k+
Cc06_g05330 405 WAECEITKLIQLRTNMEPRFQQiGCPEEILWEEIAAKMACVGYDRTPLMCKDKWDSVSSYLMKCSKKRKES 475
*********************879****************************************9998873 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009909 | Biological Process | regulation of flower development |
| GO:0010200 | Biological Process | response to chitin |
| GO:0046621 | Biological Process | negative regulation of organ growth |
| GO:0048442 | Biological Process | sepal development |
| GO:0048498 | Biological Process | establishment of petal orientation |
| GO:0090428 | Biological Process | perianth development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 527 aa
Download sequence Send
to blast |
MEEHQYGMAD LRQYMNGSRP LFAPIPPPPP DLLSGHRTLT VVPTQQHYHE MVMGRGFRSD 60
SSTSTTTPSI RCGLSTGAAI GFGSGGLEME AGCGLGGGDG GTGRWPRQET LTLLEIRSRL 120
DPKFKEANQK GPLWDEVSRI MSEEHGYQRS GKKCREKFEN LYKYYKKTKE GKAGRQDGKH 180
YRFFRQLEAL YGDTSNAASV SENHLLGNSV RYNAVANNTT SVSNQEASFQ AQKLSDSLSL 240
SNSSDFDTTS SEDSDLQATV DNDSNEKRKK RSKGKRSWKA KIKDFIDSQM TKLMKKQEAW 300
LENMMKTIEQ KEQERMLREE DWRKQEAARV EREHRFWANE RTWIESRDAA MMEALQKLTG 360
KELVKASTTP DDQELMAAHG LQSMNKHHND NGSETIPSFL KGDSWAECEI TKLIQLRTNM 420
EPRFQQIGCP EEILWEEIAA KMACVGYDRT PLMCKDKWDS VSSYLMKCSK KRKESSRFCC 480
YNDQGASPPN GDTGHGMHDG CYRYLMGDAE NLWENYGAKF SKGVNQ*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
