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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cc06_g05260 |
Common Name | GSCOC_T00043067001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family |
HSF |
Protein Properties |
Length: 461aa MW: 51395 Da PI: 5.0028 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc06_g05260 | genome | CGSC | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 75.2 | 1.1e-23 | 53 | 111 | 2 | 60 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
Fl+k++++++d++l+++isw ++g+sfvv+d+ efa+++Lp+ Fkh+nf+SFvRQLn+Y
Cc06_g05260 53 FLSKTFDLVDDPALDSIISWGASGQSFVVWDPVEFARRILPRNFKHNNFSSFVRQLNTY 111
9*********************************************************9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009408 | Biological Process | response to heat |
GO:0010200 | Biological Process | response to chitin |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 461 aa
Download sequence Send
to blast |
MVSPFVDLES RQHLQEIVPG ILSGGTITTE AARSFPGMPQ PMECLQGTPV PPFLSKTFDL 60 VDDPALDSII SWGASGQSFV VWDPVEFARR ILPRNFKHNN FSSFVRQLNT YVSVRLYGLL 120 LACVAILYGF RKIDADKWEF ASESFLRGKR HLLKNIQRRK SPHSHQLGGS SGSTGEAGKI 180 VLEGEVEKLR KERSLMMQEV FELQEQQLGT IQHVEAVNEK LQAAERRQKL MVSFMAKLFQ 240 NPDILDRLKQ IKEQKQITSS RTMRKFLKHQ PHEPGKAESF LEGQIVKYRT NFRDLATPSA 300 APEFDPGAVE QLPEFTLQEP SGGGFSSQGT EDTLLKGKTV VPPEVIPEYF VTSPDDLAKE 360 KNFPEYSSPD IESMLKEQEP WSMDFEAGAG VSSSSNEIWG NAVNYEIPEL MVSSGLPDIW 420 NLGSLPAAGS SGAEKWPDDE SPFSKLDDQV GQHKDESSNF *
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
2ldu_A | 3e-22 | 50 | 159 | 17 | 120 | Heat shock factor protein 1 |
5d5u_B | 3e-22 | 20 | 159 | 6 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-22 | 20 | 159 | 6 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-22 | 20 | 159 | 6 | 129 | Heat shock factor protein 1 |
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