PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g05030
Common NameGSCOC_T00043032001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 531aa    MW: 57655.3 Da    PI: 6.6913
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g05030genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.71.3e-17150236186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++  + +L+ea++e+   l+rg+l++ +Weev+  +  r ++ ++s +qCk+k +nl+kryk ++++ +++   s s++p+f+q+e
  Cc06_g05030 150 EWSDTAIACLLEAYTEKFMMLNRGNLRGRDWEEVAVMVseRCEKQTKSVEQCKNKVDNLKKRYKLERHRLSNG-GVSASHWPWFKQME 236
                  5**********************************999767778899************************99.566679*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.7E-20148238No hitNo description
Gene3DG3DSA:3.40.1160.103.3E-68279523IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B31.367289524IPR015963Uridylate kinase, bacteria
SuperFamilySSF536331.57E-54290523IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.54E-111292524No hitNo description
PfamPF006962.3E-19293503IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MASCDDDFSL LGDDNATTSN PNPNLIHHRQ SFTHRNLSAP NDDDDDVVSA DADGYSDGAF  60
CSSQPNPKLA NASNATSFHV VNVNPYDPDP NPFDNEHDPT KSRANNHNHT PNDKRSDREE  120
VSDSGTPYSY KRPRVSSSAT GGEYRKDREE WSDTAIACLL EAYTEKFMML NRGNLRGRDW  180
EEVAVMVSER CEKQTKSVEQ CKNKVDNLKK RYKLERHRLS NGGVSASHWP WFKQMEQIVG  240
NSLSGKAATD DDKSVGGTAN TGRQSKRYGT TTVSPGPQIN SIKSKATSAR WRRVVFKISG  300
GTLAGTAPQN IDPKVAMLVA REVSIACRMG VEVAIVVGGR NFFCGHTWVT TTGLDRFAAY  360
QAGMMATVMN SILLQSAFEK LGVQTRVQSA YSMPEVAEPY CRLRAIRHLE KGRVVIFGGI  420
GAGTGNPLFS TDLAAALRAS EINADAVLKG TNVDGVFICD SRNNNIAADH ICFTDLASGG  480
ACPMDMMAIR SCEDNGIPVV IFNLHEPGNI SRALCGEQVG TLIDQTGSVN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A2e-5827552334279Uridylate kinase
3nwy_B2e-5827552334279Uridylate kinase
3nwy_C2e-5827552334279Uridylate kinase
3nwy_D2e-5827552334279Uridylate kinase
3nwy_E2e-5827552334279Uridylate kinase
3nwy_F2e-5827552334279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027071132.10.0uncharacterized protein LOC113696032
TrEMBLA0A068V3V30.0A0A068V3V3_COFCA; Uncharacterized protein
STRINGXP_009802965.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87282427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein