PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g04990
Common NameGSCOC_T00043028001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 223aa    MW: 25397.7 Da    PI: 8.3489
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g04990genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.8e-2063116356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+ ++t++qle Le+ F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k
  Cc06_g04990  63 KKKRLTTDQLESLESSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWK 116
                  56679************************************************9 PP

2HD-ZIP_I/II115.14.1e-3762154193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +kk+rl+++q+++LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k+kqlE+ y+a+k+++d +++e+++L++ev +Lr+ lke
  Cc06_g04990  62 QKKKRLTTDQLESLESSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKAKQLERLYDAVKQELDVVSREKQKLQEEVVALRAILKE 154
                  69**************************************************************************************88875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-1949120IPR009057Homeodomain-like
PROSITE profilePS5007117.84858118IPR001356Homeobox domain
SMARTSM003892.8E-1761122IPR001356Homeobox domain
CDDcd000863.06E-1762119No hitNo description
PfamPF000462.2E-1763116IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-2164126IPR009057Homeodomain-like
PRINTSPR000316.4E-68998IPR000047Helix-turn-helix motif
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PRINTSPR000316.4E-698114IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDWNGNLRPP FISRPTDTSL GFFYNYNYDP YQVIEMKHAL QAPHAAVVSS MDKTIGYGNQ  60
DQKKKRLTTD QLESLESSFQ EEIKLDPDRK MKLAKELGLQ PRQIAVWFQN RRARWKAKQL  120
ERLYDAVKQE LDVVSREKQK LQEEVVALRA ILKEQVGKKP VSTGYTEMSG EETVESTSIP  180
SSSKPRGVGG NNLQTAECSY VFNVDDYNPV MPPYWAGLPS YP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110118RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027069703.11e-165putative homeobox-leucine zipper protein ATHB-51
RefseqXP_027173501.11e-165putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR02e-54ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A068V4481e-165A0A068V448_COFCA; Uncharacterized protein
STRINGSolyc09g008810.2.11e-104(Solanum lycopersicum)
STRINGPGSC0003DMT4000069491e-104(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.14e-48homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]