PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 223aa MW: 25397.7 Da PI: 8.3489

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc06_g04990	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.2	3.8e-20	63	116	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++qle Le+ F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k Cc06_g04990 63 KKKRLTTDQLESLESSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWK 116 56679************************************************9 PP
2	HD-ZIP_I/II	115.1	4.1e-37	62	154	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kk+rl+++q+++LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k+kqlE+ y+a+k+++d +++e+++L++ev +Lr+ lke Cc06_g04990 62 QKKKRLTTDQLESLESSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKAKQLERLYDAVKQELDVVSREKQKLQEEVVALRAILKE 154 69**************************************************************************************88875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.2E-19	49	120	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.848	58	118	IPR001356	Homeobox domain
SMART	SM00389	2.8E-17	61	122	IPR001356	Homeobox domain
CDD	cd00086	3.06E-17	62	119	No hit	No description
Pfam	PF00046	2.2E-17	63	116	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.7E-21	64	126	IPR009057	Homeodomain-like
PRINTS	PR00031	6.4E-6	89	98	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	93	116	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.4E-6	98	114	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0010434	Biological Process	bract formation
GO:0010582	Biological Process	floral meristem determinacy
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MDWNGNLRPP FISRPTDTSL GFFYNYNYDP YQVIEMKHAL QAPHAAVVSS MDKTIGYGNQ 60 DQKKKRLTTD QLESLESSFQ EEIKLDPDRK MKLAKELGLQ PRQIAVWFQN RRARWKAKQL 120 ERLYDAVKQE LDVVSREKQK LQEEVVALRA ILKEQVGKKP VSTGYTEMSG EETVESTSIP 180 SSSKPRGVGG NNLQTAECSY VFNVDDYNPV MPPYWAGLPS YP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	118	RRARWKAKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00486	DAP	Transfer from AT5G03790	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027069703.1	1e-165	putative homeobox-leucine zipper protein ATHB-51
Refseq	XP_027173501.1	1e-165	putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	2e-54	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A068V448	1e-165	A0A068V448_COFCA; Uncharacterized protein
STRING	Solyc09g008810.2.1	1e-104	(Solanum lycopersicum)
STRING	PGSC0003DMT400006949	1e-104	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3869	22	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	4e-48	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]