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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cc06_g04990 |
Common Name | GSCOC_T00043028001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family |
HD-ZIP |
Protein Properties |
Length: 223aa MW: 25397.7 Da PI: 8.3489 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc06_g04990 | genome | CGSC | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 63.2 | 3.8e-20 | 63 | 116 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+ ++t++qle Le+ F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k
Cc06_g04990 63 KKKRLTTDQLESLESSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWK 116
56679************************************************9 PP
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2 | HD-ZIP_I/II | 115.1 | 4.1e-37 | 62 | 154 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
+kk+rl+++q+++LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k+kqlE+ y+a+k+++d +++e+++L++ev +Lr+ lke
Cc06_g04990 62 QKKKRLTTDQLESLESSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKAKQLERLYDAVKQELDVVSREKQKLQEEVVALRAILKE 154
69**************************************************************************************88875 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009965 | Biological Process | leaf morphogenesis |
GO:0010434 | Biological Process | bract formation |
GO:0010582 | Biological Process | floral meristem determinacy |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
GO:0005634 | Cellular Component | nucleus |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 223 aa
Download sequence Send
to blast |
MDWNGNLRPP FISRPTDTSL GFFYNYNYDP YQVIEMKHAL QAPHAAVVSS MDKTIGYGNQ 60 DQKKKRLTTD QLESLESSFQ EEIKLDPDRK MKLAKELGLQ PRQIAVWFQN RRARWKAKQL 120 ERLYDAVKQE LDVVSREKQK LQEEVVALRA ILKEQVGKKP VSTGYTEMSG EETVESTSIP 180 SSSKPRGVGG NNLQTAECSY VFNVDDYNPV MPPYWAGLPS YP*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 110 | 118 | RRARWKAKQ |
Functional Description ? help
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Source |
Description |
UniProt | Putative transcription factor. {ECO:0000250}. |