PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g04520
Common NameGSCOC_T00042964001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 305aa    MW: 32797.7 Da    PI: 7.8612
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g04520genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00031125147123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C++sF++   L  H  +H
  Cc06_g04520 125 YQCKTCNRSFPSFQALGGHRASH 147
                  9***********99999998887 PP
2zf-C2H213.70.00018206228123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  Fs+   L  H+r+H
  Cc06_g04520 206 HECSICGAEFSSGQALGGHMRRH 228
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.3E-13124149IPR007087Zinc finger, C2H2
SuperFamilySSF576677.65E-9124147No hitNo description
PROSITE profilePS5015711.863125152IPR007087Zinc finger, C2H2
SMARTSM003550.03125147IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
SuperFamilySSF576677.65E-9201228No hitNo description
PfamPF139125.7E-13205229IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743206228IPR007087Zinc finger, C2H2
SMARTSM003550.01206228IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280208228IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEVHQEEIIL GSKHMIFKGK RTKRQRTVSQ PPFLLTMATT TSSSCSTGTP GGDSFTAFNR  60
VTASPSNSGE LTQTSVAGVD QEEDMANCLI LLAQGRARKS TQPTTHLPMP STSTAKSSSA  120
VHDVYQCKTC NRSFPSFQAL GGHRASHKKP KPTDLEDKSP PPLSLGGHQE STVGLIRDED  180
TTLSLQIPSG RKDPIISGDV NKSRVHECSI CGAEFSSGQA LGGHMRRHRP LPTLTGTSSN  240
DDEGSREFAA KKPRALLSLD LNLPAPPDQP EDDYSTESKY PFASAKQQVI VFSASPHPLV  300
DCHY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027070587.10.0zinc finger protein ZAT5-like
TrEMBLA0A068V3D70.0A0A068V3D7_COFCA; Uncharacterized protein
STRINGXP_006493540.15e-77(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.15e-55C2H2 family protein