PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g03950
Common NameGSCOC_T00023696001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ARF
Protein Properties Length: 706aa    MW: 76933.8 Da    PI: 6.7194
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g03950genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82.1e-23121222199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + +++ 
  Cc06_g03950 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGDTWKFRHIYRGTPRRHLLTTGWSTFVNSKKLVAGDSIVFL--RAKNGD 214
                  89****************************996555555..89***********************************************..347888 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  Cc06_g03950 215 LCVGIRRA 222
                  8****997 PP
2Auxin_resp113.61.8e-37287370183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  aa+ a+++++Fe+vY+Pras++eF+vk++ v++al+++++ GmRfkm fetedss++++ +Gtv++v+ +dp+rWp+S+Wr+L+
  Cc06_g03950 287 AATLAANGQPFEIVYYPRASNPEFCVKASLVRAALQIHWCSGMRFKMPFETEDSSRISWfMGTVSSVQVADPIRWPDSPWRLLQ 370
                  68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-37113224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.02E-29118227IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-19120217No hitNo description
PROSITE profilePS5086313.155121223IPR003340B3 DNA binding domain
SMARTSM010194.1E-22121223IPR003340B3 DNA binding domain
PfamPF023621.1E-21121222IPR003340B3 DNA binding domain
PfamPF065072.8E-32287370IPR010525Auxin response factor
PROSITE profilePS5174516.288602682IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MIAFMDSRDK VHETEKCLDS QLWHACAGSM VQMPPANSKV LYFPQGHAEH VCGNVDFGNC  60
PLIPAYTRCR VSAIKFMADS ETDEVFAKVR LIPIEGNGAD FDEDGVGGVS GMDDREKPTS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGDT WKFRHIYRGT  180
PRRHLLTTGW STFVNSKKLV AGDSIVFLRA KNGDLCVGIR RARRGVGGGL EPSSGWNAAG  240
RSCVMPHGGF SAFLREDESK LMRNGSESSS GTSMGRGRLK AESVTEAATL AANGQPFEIV  300
YYPRASNPEF CVKASLVRAA LQIHWCSGMR FKMPFETEDS SRISWFMGTV SSVQVADPIR  360
WPDSPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LFPFSPPRKK LRLPQHSQFP  420
LDGQLPAPTF SGNHLLGPSS HFGCLPDNTP AGMQGARHAQ YGLSLSDLHF NKLQSGLFPV  480
GLQPLYPTAL PGHSNRPIIH KPSSGENISC LLTAGSSAQS AEKIGSCKAP QFVLFGQPIL  540
TEQQISLSCS GDAVSPVRTG NSSSDDNADK MGNTSDVSGS ALNLEGVNER SSCEGSEDNL  600
DIGHCKVFME SEDVGRTLDL SLLESYEQLY EKLADMFGVR TSEVLNHVLY RDRTGAVRQL  660
GDETFSVFAK TARRLTILTD SSSDNVGPYT AEIMRKTSVS NCMAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-82839141388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027173104.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A068UEZ10.0A0A068UEZ1_COFCA; Auxin response factor
STRINGSolyc09g007810.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]