PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g03810
Common NameGSCOC_T00023677001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 555aa    MW: 59367.7 Da    PI: 9.6405
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g03810genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-057597123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C++C+k F r  nL+ H r H
  Cc06_g03810 75 FICEICNKGFQREQNLQLHRRGH 97
                 89*******************88 PP
2zf-C2H212.60.00042152174123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H +t+
  Cc06_g03810 152 WKCEKCSKKYAVQSDWKAHSKTC 174
                  58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.7E-67497IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.79E-77497No hitNo description
PfamPF121712.3E-57597IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00447597IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.977597IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM00355100117147IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-4140173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.79E-7147172No hitNo description
SMARTSM00355140152172IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010075Biological Processregulation of meristem growth
GO:0045604Biological Processregulation of epidermal cell differentiation
GO:0048364Biological Processroot development
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MLVMSANMFT VPPSVNGFSP EPADTNPTSS NSNPKSNSTT TNPAGKKKRN LPGNPDPDAE  60
VIALSPKTLM ATNRFICEIC NKGFQREQNL QLHRRGHNLP WKLKQRTTKE QVKRKVYICP  120
EKTCVHHDPS RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYK  180
CDCGTLFSRK DSFITHRAFC DALAEESARI TSVAANNFNF KTDQQHLNGG ALLNHPGSFP  240
HGLSGPSGIS QIGVDFATGN QLKPRLSLWL DQASNPQLNH ADMPPSQNLY MPSASHHDIM  300
QMSSAADVFG NYGMPWQQLE KSSAPPSSAS SSSAANLSLS PMMPQQVLKD EGAGGSINTQ  360
TLSSLYSPSA ASNNDISHSK SSATPMSATA LLQKAAQMGS SKSTAAIFGN GFGIMNPSSS  420
SSSPAVAANM IAPAAFSSGL AQNRTEMMQV FGKQTDNMMG GGSNMTSSTS STLTNNLDHQ  480
PMVQTSTVAD SQTVASLGGF HRHPGFNAVV EHASLTRDFL GMGGDGGRPF LPHELAKFAS  540
MSSAMGLGHF SSNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-39148217372Zinc finger protein JACKDAW
5b3h_F1e-39148217372Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00485DAPTransfer from AT5G03150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027070014.10.0zinc finger protein JACKDAW-like
TrEMBLA0A068UDX20.0A0A068UDX2_COFCA; Uncharacterized protein
STRINGPOPTR_0006s13130.11e-179(Populus trichocarpa)
STRINGXP_009781290.11e-179(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-103C2H2-like zinc finger protein