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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc06_g03790 | ||||||||
Common Name | GSCOC_T00023675001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | NAC | ||||||||
Protein Properties | Length: 361aa MW: 40619 Da PI: 8.7963 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166 | 1.3e-51 | 12 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhP+deel+v+yL+kk+++ +l++ +i++v++yk++PwdLpkk+ +e+ewyfF++rd+ky++g r+nr+++sgyWkatg+dk++ls+ + Cc06_g03790 12 LPPGFRFHPSDEELIVHYLRKKATKIPLPA-AIIADVELYKFNPWDLPKKALFGEDEWYFFTPRDRKYPNGMRPNRMASSGYWKATGTDKPILSSsGA 108 79***************************9.88***************88888999*************************************99677 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +++g kk Lvfy+gr pkg+ktdW+mheyrl Cc06_g03790 109 KVIGAKKALVFYTGRPPKGNKTDWIMHEYRL 139 78***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-62 | 8 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.071 | 12 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-26 | 13 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MEKDPLNQEI QLPPGFRFHP SDEELIVHYL RKKATKIPLP AAIIADVELY KFNPWDLPKK 60 ALFGEDEWYF FTPRDRKYPN GMRPNRMASS GYWKATGTDK PILSSSGAKV IGAKKALVFY 120 TGRPPKGNKT DWIMHEYRLP EATWTAKKER SMRLDDWVLC RVRQKTGTAG NLWEDRNDPA 180 SKETAQCHLK LDKHCPVPMG TRSTAPATAE MVREYLYRDC PMVPFLFGSQ EFACMDTVSN 240 IIRNKTSSVC GDNFNIDHLQ NAVLPSSSSS GNGLLHMRKR KNILTIEGNG GEGDISFTHP 300 HKKQTHRSEG QMEGNQPQST SNDTTGTVSC STNQMEKNNS SADQLGSIMM YQDLYSLAFA 360 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-70 | 2 | 169 | 8 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-70 | 2 | 169 | 8 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-70 | 2 | 169 | 8 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-70 | 2 | 169 | 8 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-70 | 2 | 169 | 11 | 172 | NAC domain-containing protein 19 |
3swm_B | 3e-70 | 2 | 169 | 11 | 172 | NAC domain-containing protein 19 |
3swm_C | 3e-70 | 2 | 169 | 11 | 172 | NAC domain-containing protein 19 |
3swm_D | 3e-70 | 2 | 169 | 11 | 172 | NAC domain-containing protein 19 |
3swp_A | 3e-70 | 2 | 169 | 11 | 172 | NAC domain-containing protein 19 |
3swp_B | 3e-70 | 2 | 169 | 11 | 172 | NAC domain-containing protein 19 |
3swp_C | 3e-70 | 2 | 169 | 11 | 172 | NAC domain-containing protein 19 |
3swp_D | 3e-70 | 2 | 169 | 11 | 172 | NAC domain-containing protein 19 |
4dul_A | 2e-70 | 2 | 169 | 8 | 169 | NAC domain-containing protein 19 |
4dul_B | 2e-70 | 2 | 169 | 8 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027070370.1 | 0.0 | NAC transcription factor 56-like | ||||
TrEMBL | A0A068UGJ2 | 0.0 | A0A068UGJ2_COFCA; Uncharacterized protein | ||||
STRING | VIT_08s0040g02110.t01 | 1e-119 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13390 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 7e-79 | NAC domain containing protein 25 |