![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cc06_g00950 | ||||||||
Common Name | GSCOC_T00023300001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 539aa MW: 60499.3 Da PI: 4.5636 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 133.1 | 3.1e-41 | 156 | 537 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +lL++ Aea++ g+ ela+ + +r+se +sp gd+++Rl y+ AL ++ +++s ++ +a+k+f++++P kf+h++aN Cc06_g00950 156 HLLMAYAEAMEMGQEELAEVIAKRISEKVSPVGDTVERLLYYMFHALDKQSDY----------LKQES---AKNFYQAFKAFYQIFPNGKFAHFAANL 240 89*********************************************998665..........33333...67899999******************* PP GRAS 101 aIleavege.ervHiiDfdisqGlQWpaLlqaLa..sRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledl.. 189 aIle++ + +++ i Dfdi++G+QW++L++a+ +R+ s++ ++++ + + e +++L+++A++ g+++ + + +l+dl Cc06_g00950 241 AILESLPDDaDTIRIFDFDIGEGIQWASLIEAIGhqCREVTLTSVKFAEGEDAAMDanplTMWRFEDAKKQLSDYARSYGLKLMVDEV---ELADLvg 335 ******8877***********************94455566666666655555544888889999********************998...3333323 PP GRAS 190 eleeLrvkp......gEalaVnlvlqlhrlldesvsles.....erdevLklvks......lsPkvvvvveqe..adh.nsesFlerflealeyysal 267 el++++ ++ + l+ n+++ l ++ + + + + +++L+lv + v+++ + + + n++++ + + +y al Cc06_g00950 336 ELKNISNRKqgssgrRQFLVFNCMVGLPHMGRVRSRRDVfeflqASQSFLQLVHAsaacgnYKGGVITFGDGDawEKVrNTSTYGSFLDGNMAHYQAL 433 45555544455555699************995444433344454788999999752222225778******9943233599999999999******** PP GRAS 268 fdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgW 362 ++s++ ++p++ e+r+ +E+ +++++++++ +e+ e r+r + +G++ ++ls + ++ak ++r+ + g r++ e+++++v+ W Cc06_g00950 434 LESIKLNFPSHLgEARTAMENLFVAPSVSSLAWAEKWEERKRYGQ------LELGFGLEGLKLSRESLMEAKEVVREGEsLYGVRMQgESHNEMVMDW 525 *********999899*********************995555553......3356999********************988889988899******** PP GRAS 363 kdrpLvsvSaWr 374 ++ p+v vS+Wr Cc06_g00950 526 RGTPMVRVSCWR 537 ***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 21.869 | 128 | 515 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-38 | 156 | 537 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 539 aa Download sequence Send to blast |
MTESQIFQPS WPYFRHDNNL NSILDNVRED GFCGGGEYTC YPLPTLMEES YLETSMLQER 60 CANFPVHLDG DMDITTEDVL VYFEDPISID GQITDVSMSP EESKGGNCIH SCHQISMPSS 120 SMRSSHAASL DVTSMPSSLV LPAEGVELDN ELAAFHLLMA YAEAMEMGQE ELAEVIAKRI 180 SEKVSPVGDT VERLLYYMFH ALDKQSDYLK QESAKNFYQA FKAFYQIFPN GKFAHFAANL 240 AILESLPDDA DTIRIFDFDI GEGIQWASLI EAIGHQCREV TLTSVKFAEG EDAAMDANPL 300 TMWRFEDAKK QLSDYARSYG LKLMVDEVEL ADLVGELKNI SNRKQGSSGR RQFLVFNCMV 360 GLPHMGRVRS RRDVFEFLQA SQSFLQLVHA SAACGNYKGG VITFGDGDAW EKVRNTSTYG 420 SFLDGNMAHY QALLESIKLN FPSHLGEART AMENLFVAPS VSSLAWAEKW EERKRYGQLE 480 LGFGLEGLKL SRESLMEAKE VVREGESLYG VRMQGESHNE MVMDWRGTPM VRVSCWRS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027173088.1 | 0.0 | nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A068UE03 | 0.0 | A0A068UE03_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5361 | 19 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G41920.1 | 9e-14 | GRAS family protein |