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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc06_g00940 | ||||||||
Common Name | GSCOC_T00023299001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 564aa MW: 63031.1 Da PI: 4.8343 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 145.1 | 6.8e-45 | 205 | 562 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l +lL++ eav +g++ela+ ++ r+ e+ p g++++Rla+ + + +++ y ++s +++ aa+k+f++ +P+ +f+h+ta Cc06_g00940 205 LHHLLTAHGEAVGNGHQELAEVIVRRITERIDPLGEALERLAFNLFQSAENQGC------Y----LGQQS---TKNFEAAFKAFYQWFPYGRFAHFTA 289 579999************************************987776555443......3....22333...45677899***************** PP GRAS 99 NqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 N+aIlea+ ++ e++Hi+Dfd+++G+QWp+L+++++ + slR+T + s +s eet++rL + A++lg++++ + + +ledl e+ r Cc06_g00940 290 NSAILEAMPSDaETIHIVDFDMGEGIQWPPLMDSISRK---GKSLRLTSIIS--GDSCWVFEETRQRLYDHARSLGLRLNVEEM---ALEDLVAEMKR 379 ********98889**********************986...458********..45999********************99997...88999888888 PP GRAS 196 vkp....gEalaVnlvlqlhrlldesvsleserdevLklvksl......sPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpres. 279 +k+ +E la nl+++l ++ ++ + + + e+L l k+l ++++ + e ++ n +++ f + + +y alf+s+e ++p Cc06_g00940 380 TKKkggaREWLAFNLMVALPHMG-RR-ADRRRVVEFLTLAKDLlvysagDKGIITIGDGEggGNLqNCPEYSSFFNSHFTHYQALFESMECNFPVYLa 475 88888889**************8.33.33334799******995554433579***99995556678889************************8766 PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerlee...aGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvS 371 e+ri +E +l++ +++ h +++W+++ ++ +G+ ++s + +ak ++++ k y+v+ e+++++vl W++ pLv vS Cc06_g00940 476 EARIAMESLFLAPYVSS------------HSWFQHWQDARGSqplCGLDGRRMSRDCLIEAKEIVNEQKAS-YKVNfqkENENEIVLEWRGIPLVRVS 560 9********99988764............55577887766544559**********************954.888766677999************** PP GRAS 372 aW 373 +W Cc06_g00940 561 SW 562 ** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 24.105 | 179 | 541 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.3E-42 | 205 | 562 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 564 aa Download sequence Send to blast |
MAGGNPVSPK SQLIRELRVL LPLQSQQCIS TKAKRKMMGS QLLQPSWPLY STVNLDHAGL 60 HSFPMDICID EPHDFSSSFA TEESSGISFD SYFAAMTSPD SLVEFPIFDD EKRGGDTMAH 120 IMDGLEPISS SGAIEEDCQW LEESDNGEDY ISSQLTPEAD AWRACPPMEQ SKPGSASTMN 180 ATPSGSMSLT FPPVNNMGTD TQLGLHHLLT AHGEAVGNGH QELAEVIVRR ITERIDPLGE 240 ALERLAFNLF QSAENQGCYL GQQSTKNFEA AFKAFYQWFP YGRFAHFTAN SAILEAMPSD 300 AETIHIVDFD MGEGIQWPPL MDSISRKGKS LRLTSIISGD SCWVFEETRQ RLYDHARSLG 360 LRLNVEEMAL EDLVAEMKRT KKKGGAREWL AFNLMVALPH MGRRADRRRV VEFLTLAKDL 420 LVYSAGDKGI ITIGDGEGGG NLQNCPEYSS FFNSHFTHYQ ALFESMECNF PVYLAEARIA 480 MESLFLAPYV SSHSWFQHWQ DARGSQPLCG LDGRRMSRDC LIEAKEIVNE QKASYKVNFQ 540 KENENEIVLE WRGIPLVRVS SWI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-16 | 239 | 562 | 37 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027066203.1 | 0.0 | nodulation-signaling pathway 2 protein-like | ||||
Refseq | XP_027070545.1 | 0.0 | nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A068UFN3 | 0.0 | A0A068UFN3_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5361 | 19 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17490.1 | 5e-20 | RGA-like protein 3 |