PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g00940
Common NameGSCOC_T00023299001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 564aa    MW: 63031.1 Da    PI: 4.8343
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g00940genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS145.16.8e-452055621373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l +lL++  eav +g++ela+ ++ r+ e+  p g++++Rla+ + +  +++        y      ++s   +++  aa+k+f++ +P+ +f+h+ta
  Cc06_g00940 205 LHHLLTAHGEAVGNGHQELAEVIVRRITERIDPLGEALERLAFNLFQSAENQGC------Y----LGQQS---TKNFEAAFKAFYQWFPYGRFAHFTA 289
                  579999************************************987776555443......3....22333...45677899***************** PP

         GRAS  99 NqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                  N+aIlea+ ++ e++Hi+Dfd+++G+QWp+L+++++ +     slR+T + s   +s    eet++rL + A++lg++++ + +   +ledl  e+ r
  Cc06_g00940 290 NSAILEAMPSDaETIHIVDFDMGEGIQWPPLMDSISRK---GKSLRLTSIIS--GDSCWVFEETRQRLYDHARSLGLRLNVEEM---ALEDLVAEMKR 379
                  ********98889**********************986...458********..45999********************99997...88999888888 PP

         GRAS 196 vkp....gEalaVnlvlqlhrlldesvsleserdevLklvksl......sPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpres. 279
                  +k+    +E la nl+++l ++  ++ + + +  e+L l k+l         ++++ + e   ++ n +++   f + + +y alf+s+e ++p    
  Cc06_g00940 380 TKKkggaREWLAFNLMVALPHMG-RR-ADRRRVVEFLTLAKDLlvysagDKGIITIGDGEggGNLqNCPEYSSFFNSHFTHYQALFESMECNFPVYLa 475
                  88888889**************8.33.33334799******995554433579***99995556678889************************8766 PP

         GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerlee...aGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvS 371
                  e+ri +E  +l++ +++            h  +++W+++ ++   +G+   ++s +   +ak ++++ k   y+v+   e+++++vl W++ pLv vS
  Cc06_g00940 476 EARIAMESLFLAPYVSS------------HSWFQHWQDARGSqplCGLDGRRMSRDCLIEAKEIVNEQKAS-YKVNfqkENENEIVLEWRGIPLVRVS 560
                  9********99988764............55577887766544559**********************954.888766677999************** PP

         GRAS 372 aW 373
                  +W
  Cc06_g00940 561 SW 562
                  ** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.105179541IPR005202Transcription factor GRAS
PfamPF035142.3E-42205562IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MAGGNPVSPK SQLIRELRVL LPLQSQQCIS TKAKRKMMGS QLLQPSWPLY STVNLDHAGL  60
HSFPMDICID EPHDFSSSFA TEESSGISFD SYFAAMTSPD SLVEFPIFDD EKRGGDTMAH  120
IMDGLEPISS SGAIEEDCQW LEESDNGEDY ISSQLTPEAD AWRACPPMEQ SKPGSASTMN  180
ATPSGSMSLT FPPVNNMGTD TQLGLHHLLT AHGEAVGNGH QELAEVIVRR ITERIDPLGE  240
ALERLAFNLF QSAENQGCYL GQQSTKNFEA AFKAFYQWFP YGRFAHFTAN SAILEAMPSD  300
AETIHIVDFD MGEGIQWPPL MDSISRKGKS LRLTSIISGD SCWVFEETRQ RLYDHARSLG  360
LRLNVEEMAL EDLVAEMKRT KKKGGAREWL AFNLMVALPH MGRRADRRRV VEFLTLAKDL  420
LVYSAGDKGI ITIGDGEGGG NLQNCPEYSS FFNSHFTHYQ ALFESMECNF PVYLAEARIA  480
MESLFLAPYV SSHSWFQHWQ DARGSQPLCG LDGRRMSRDC LIEAKEIVNE QKASYKVNFQ  540
KENENEIVLE WRGIPLVRVS SWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-1623956237374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066203.10.0nodulation-signaling pathway 2 protein-like
RefseqXP_027070545.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A068UFN30.0A0A068UFN3_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.15e-20RGA-like protein 3