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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc05_g16190 | ||||||||
Common Name | GSCOC_T00038595001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | NAC | ||||||||
Protein Properties | Length: 304aa MW: 34476.8 Da PI: 8.4436 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.7 | 3.2e-51 | 24 | 151 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kg 97 pGfrFhPtdeelv +yL++kve+k+++l e ik++diyk++PwdLpk+ + ++kewyfF+kr +ky+++ r+nr+t sg+Wkatg d++++s+ ++ Cc05_g16190 24 PGFRFHPTDEELVGFYLRRKVEKKPISL-ELIKQIDIYKYDPWDLPKASTVGDKEWYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDRPIYSAggeGR 120 9***************************.99***************888889****************************************965555 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +glkk+Lv+y+g+a kg+ktdW+mhe+rl Cc05_g16190 121 DCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 151 55***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 54.165 | 22 | 184 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-55 | 22 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.0E-26 | 24 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005992 | Biological Process | trehalose biosynthetic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006561 | Biological Process | proline biosynthetic process | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MEMETMSSVV TTNSKDEDDD VPLPGFRFHP TDEELVGFYL RRKVEKKPIS LELIKQIDIY 60 KYDPWDLPKA STVGDKEWYF FCKRGRKYRN SIRPNRVTGS GFWKATGIDR PIYSAGGEGR 120 DCIGLKKSLV YYRGSAGKGT KTDWMMHEFR LPAEHDNIKS TKHIDAKNIA QEAEVWTLCR 180 IFKRNVSYRK CMPDWKEISG KRLSNAVDAS SKTCSMEFDN NDKKPLINNN NNNNNNNSVH 240 GLGHVDITNQ LLMSQLSSFS QAPSSTTASY ASFASSDATD FLKHGDWDEL RSMVEFGAGP 300 TFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-51 | 24 | 190 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-51 | 24 | 190 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-51 | 24 | 190 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-51 | 24 | 190 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-51 | 24 | 190 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-51 | 24 | 190 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-51 | 24 | 190 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-51 | 24 | 190 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-51 | 24 | 190 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-51 | 24 | 190 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-51 | 24 | 190 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-51 | 24 | 190 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 7e-51 | 24 | 190 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-51 | 24 | 190 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00310 | DAP | Transfer from AT2G43000 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027063813.1 | 0.0 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 5e-95 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A068UZ64 | 0.0 | A0A068UZ64_COFCA; Uncharacterized protein | ||||
STRING | XP_009778771.1 | 1e-143 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1697 | 24 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 2e-93 | NAC domain containing protein 42 |