PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g15710
Common NameGSCOC_T00038655001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 492aa    MW: 53995.2 Da    PI: 5.3655
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g15710genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015131150221
                  EETTTTEEESSHHHHHHHHH CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                  +C++Cgk F++  +L  H+r
  Cc05_g15710 131 TCSICGKNFPSMKSLFGHMR 150
                  6******************8 PP
2zf-C2H212.60.00041329351123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C  C+k+F+++  L  H ++H
  Cc05_g15710 329 YRCATCDKCFPTHQALGGHRSSH 351
                  9***************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.4E-97496IPR007087Zinc finger, C2H2
SMARTSM003550.247496IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.28674101IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
PROSITE profilePS501579.847130157IPR007087Zinc finger, C2H2
SMARTSM003550.018130152IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.19E-9131152No hitNo description
PfamPF139126.2E-8132154IPR007087Zinc finger, C2H2
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
SuperFamilySSF576679.19E-9324351No hitNo description
PfamPF139121.8E-6329352IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.076329356IPR007087Zinc finger, C2H2
SMARTSM003550.25329351IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280331351IPR007087Zinc finger, C2H2
PfamPF139121.9E-6400424IPR007087Zinc finger, C2H2
SMARTSM00355140400422IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MSTVDDKEDQ ISESIKREHP DHKSSVLGDH GELWIKLKIN PSSDEDGDEE EEDFEKDQPE  60
RPPQSKPKSN SNTRICQVCS KVFGSGKALG GHMRIHFQTN KDNKDLWKIK SSSSDHDSAV  120
AGFNKNNTNP TCSICGKNFP SMKSLFGHMR CHPDREWRGI QPPSWAAVKP SPSSSLSDAE  180
PQKTDVDDDD YQHHQVDSAD GDGDQTVDLT KTLGGWSVTA KRGRKAIVEN IEEDEGMRDA  240
VYHLMSLAQG GDSSSDVKLQ VKNRHKFEEF EATNSNSLAY KSENDEDLMT KSAPGSKKKR  300
KKESLADHPL RDLDQFNPVL TLTTSLEKYR CATCDKCFPT HQALGGHRSS HNKFRMVIQN  360
SYGESTFAAA TDEYGTLGNY TPNPGVDESK ESDEGAASSH ECRIGNKKFL TGQALGGHKR  420
CHWPAAGQMD GPSSQVTSAG EVSGTDRRVM EFDLNEVPPL EEDAGVECDH AAGYGCASSS  480
FNSVEFQGLC A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297301KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027061150.10.0uncharacterized protein LOC113687825
TrEMBLA0A068UYN10.0A0A068UYN1_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.14e-40C2H2 family protein