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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc05_g12680 | ||||||||
Common Name | GSCOC_T00021159001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | B3 | ||||||||
Protein Properties | Length: 259aa MW: 29337.5 Da PI: 6.2641 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.5 | 1e-17 | 154 | 255 | 1 | 99 |
EEEE-..-H.HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsd.vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k l+ d lk++rl++pkk+ae++ ++++++++ l+++d++g W+++++y +++s++y+l+ G ++F +++ ++gD+v+F++++ +++lv Cc05_g12680 154 FEKLLSATDaDLKLARLIIPKKCAEAFfpDISEPRGFLLKIQDTEGMDWDFNYRYwiNGGSKMYILE-GLRDFMISKRWQAGDTVTFYRVE-PGGKLV 249 55666544415677***************99999*********************544445556666.********************776.99999* PP EEEE-S CS B3 94 vkvfrk 99 ++++++ Cc05_g12680 250 IGLRKT 255 999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.02E-19 | 151 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-24 | 151 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.76E-19 | 152 | 254 | No hit | No description |
SMART | SM01019 | 1.5E-17 | 154 | 256 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.306 | 155 | 256 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-14 | 161 | 254 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MGSTSTSSSS KISCFQCEET SSSFDHFRNG WRLRSGEFAQ LCPRCASIYE EGKFCEAFHS 60 NDDGWRDCES CGKLVHCGCI VSFNAYLLLD FGGVICMECS RINFALARSR CLFLEGQPDI 120 TRQTVIEPQY RPRSSEVEVQ QISRNFDCVV TPLFEKLLSA TDADLKLARL IIPKKCAEAF 180 FPDISEPRGF LLKIQDTEGM DWDFNYRYWI NGGSKMYILE GLRDFMISKR WQAGDTVTFY 240 RVEPGGKLVI GLRKTSSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-43 | 132 | 257 | 2 | 126 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027061772.1 | 0.0 | B3 domain-containing protein Os07g0563300-like isoform X1 | ||||
Swissprot | Q6Z3U3 | 1e-40 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A068UBK4 | 0.0 | A0A068UBK4_COFCA; Uncharacterized protein | ||||
STRING | Migut.H01903.1.p | 1e-119 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12994 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 1e-42 | high-level expression of sugar-inducible gene 2 |
Publications ? help Back to Top | |||
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