PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g12500
Common NameGSCOC_T00021185001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 356aa    MW: 39614.3 Da    PI: 8.7301
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g12500genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1707.5e-53141391128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lppGfrF Ptdeel+v+yL++kv+g++++l ++i e+d+yk++PwdLp+k+  +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk +++ +g+
  Cc05_g12500  14 LPPGFRFYPTDEELLVQYLCRKVAGHDFNL-QIIGEIDLYKFDPWDLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITT-EGR 109
                  79****************************.89***************7777799*************************************99.999 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  +vg+kk Lvfy g+apkg+kt+W+mheyrl
  Cc05_g12500 110 KVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139
                  ****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-679162IPR003441NAC domain
PROSITE profilePS5100561.09714162IPR003441NAC domain
PfamPF023652.8E-2615139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGVRETDPLS QLSLPPGFRF YPTDEELLVQ YLCRKVAGHD FNLQIIGEID LYKFDPWDLP  60
SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVITTEGRK VGIKKALVFY  120
VGKAPKGTKT NWIMHEYRLS EPQRKNGSAR LDDWVLCRIY KKNSSAGAKP VSGLQSREHS  180
HGSSTSSSSQ FDDVLESLPE ISDRFFALPR MNSLKNLHQE DQKINIQNLG SGSFDWATLA  240
GLNSLPELGP GSQAQAIPAA AAHGHVNSNV ASCNNNDRNN NVNAQNDMYV PSFPQAGHVD  300
EEVQSGLRSH RVENPSFFQH NASPLVPHTH SFHNSVDPFG IRYPPTQTGI MGFRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-11011667172NAC domain-containing protein 19
3swm_B1e-11011667172NAC domain-containing protein 19
3swm_C1e-11011667172NAC domain-containing protein 19
3swm_D1e-11011667172NAC domain-containing protein 19
3swp_A1e-11011667172NAC domain-containing protein 19
3swp_B1e-11011667172NAC domain-containing protein 19
3swp_C1e-11011667172NAC domain-containing protein 19
3swp_D1e-11011667172NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027063418.10.0NAC domain-containing protein 72-like
SwissprotA0A3Q7HH641e-161JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBLA0A068UCE60.0A0A068UCE6_COFCA; Uncharacterized protein
STRINGMigut.M00863.1.p1e-172(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31222452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-128NAC family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]