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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc05_g11720 | ||||||||
Common Name | GSCOC_T00021278001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | NAC | ||||||||
Protein Properties | Length: 359aa MW: 39347.1 Da PI: 8.0037 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.9 | 6.8e-56 | 14 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdeel+++yL kkv +++++ ++i+evd++k+ePw+Lp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd+e++s+ + Cc05_g11720 14 LPPGFRFHPTDEELITYYLLKKVLDSNFTG-KAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSkTC 110 79*************************999.88***************99999****************************************97455 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 +lvg+kktLvfy+grapkgek++Wvmheyrle Cc05_g11720 111 SLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 142 67****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-62 | 11 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.071 | 14 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.7E-29 | 15 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0010160 | Biological Process | formation of organ boundary | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048504 | Biological Process | regulation of timing of organ formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MANYHYYESS DAHLPPGFRF HPTDEELITY YLLKKVLDSN FTGKAIAEVD LNKCEPWELP 60 EKAKMGEKEW YFFSLRDRKY PTGLRTNRAT EAGYWKATGK DREIYSSKTC SLVGMKKTLV 120 FYRGRAPKGE KSNWVMHEYR LEGKFAYHYL SRSSKDEWVI SRVFQKCGAG TGPGSGGGKK 180 RLAPGINLYP EASSPSSVSL PPLLDSSTYT ATSATSASTT DHESCSYDCN SAKEHVPCFS 240 NSAAASFNHN SVFELPPPPL PPPAPAATLL SSLFDPSPSS GARFPRTNAG LSAFPNLRSL 300 QENLHCPFFF PTAAAAAPPP QPINGSDANG IHYGSVTNWS APDNQKVGPA ELDCLWSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-51 | 14 | 166 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-51 | 14 | 166 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-51 | 14 | 166 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-51 | 14 | 166 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-51 | 14 | 166 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 5e-51 | 14 | 166 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 5e-51 | 14 | 166 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 5e-51 | 14 | 166 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 5e-51 | 14 | 166 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 5e-51 | 14 | 166 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 5e-51 | 14 | 166 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 5e-51 | 14 | 166 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 4e-51 | 14 | 166 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-51 | 14 | 166 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00562 | DAP | Transfer from AT5G53950 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM and SYD, at the chromatin level, and conferring a very specific spatial expression pattern. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027062526.1 | 0.0 | protein CUP-SHAPED COTYLEDON 2 | ||||
Refseq | XP_027172260.1 | 0.0 | protein CUP-SHAPED COTYLEDON 2 | ||||
Refseq | XP_027172265.1 | 0.0 | protein CUP-SHAPED COTYLEDON 2-like | ||||
Swissprot | O04017 | 1e-111 | NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2 | ||||
TrEMBL | A0A068UCE4 | 0.0 | A0A068UCE4_COFCA; Uncharacterized protein | ||||
STRING | XP_009615029.1 | 1e-157 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53950.1 | 1e-102 | NAC family protein |