PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g09340
Common NameGSCOC_T00002644001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 268aa    MW: 30895.6 Da    PI: 6.1773
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g09340genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.84.7e-1423981298
                 HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3 12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                 + + + +p +f+ ++ +gk ++     +  +  ++W+vk+  + +     l++GW+ F+ +n+L +gDfvvF++++++ f   v vf+
  Cc05_g09340 23 E-DGVKIPDSFL-KYlDGKIPQ--NQAVLRRGDEEWRVKI--SDQC----LREGWRAFAVENELHVGDFVVFEHEENMVF--EVLVFD 98
                 4.4599******.555666444..456667899*******..5554....9**********************9998999..777776 PP
2B345.71.1e-14151238598
                  -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ++++++l  +rl +p +f++++g+ k +   ++l+d++g  W+vkl  +  ++  v++ G k+F ka+++kegD ++++l++ +++++v+ ++ 
  Cc05_g09340 151 TVKPSTLLYHRLHIPMDFVRANGLRK-C--NMMLRDQRGILWTVKL--NLEPRCAVIKCGCKSFLKAQEMKEGDEFMLELIR-NGETPVFNFYG 238
                  45667777789***********9995.5..5***************..8888889*************************99.66668887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-217102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-209107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.54711100IPR003340B3 DNA binding domain
CDDcd100171.26E-161298No hitNo description
SMARTSM010191.3E-1414100IPR003340B3 DNA binding domain
PfamPF023629.6E-112396IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.6E-17143236IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-15144236IPR015300DNA-binding pseudobarrel domain
CDDcd100173.15E-13146237No hitNo description
PROSITE profilePS508639.248147239IPR003340B3 DNA binding domain
SMARTSM010191.8E-17147240IPR003340B3 DNA binding domain
PfamPF023621.0E-13149237IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MAMRNKIPPE KPHFFKPILP GFEDGVKIPD SFLKYLDGKI PQNQAVLRRG DEEWRVKISD  60
QCLREGWRAF AVENELHVGD FVVFEHEENM VFEVLVFDPS HCERQFPSID NDGKGEAEEI  120
PRSKKVKLEQ SDDQEESDST DQICCPYFIS TVKPSTLLYH RLHIPMDFVR ANGLRKCNMM  180
LRDQRGILWT VKLNLEPRCA VIKCGCKSFL KAQEMKEGDE FMLELIRNGE TPVFNFYGKS  240
LPSKTFVDLQ MFRVHGNSLL APIPVEK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027063114.11e-171B3 domain-containing protein REM14-like
TrEMBLA0A068VD360.0A0A068VD36_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.12e-34B3 family protein