PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g08380
Common NameGSCOC_T00016856001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 331aa    MW: 36300.9 Da    PI: 9.5155
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g08380genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.46.6e-1762152186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W+++ +++Liea  +   +l+rg+l++++W+ev++++     + ++++r+ +qCk++++ l+k+yk +k+   + + +++st+p+f +l+
  Cc05_g08380  62 CWSEDATHTLIEAWGSHYLDLNRGNLRQKHWQEVADAVnadhaHTKKLHRTDIQCKNRIDTLKKKYKLEKAKFLQSNGRVVSTWPFFASLD 152
                  7****************************************99999*************************99998999*********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.8E-2660154No hitNo description
Gene3DG3DSA:1.10.10.608.1E-461126IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSDEDDAGLP PTSTNTKPTT PTSPSPSPPP PPSSSADIFP PHPPPRPSTT TKATSFPIRE  60
DCWSEDATHT LIEAWGSHYL DLNRGNLRQK HWQEVADAVN ADHAHTKKLH RTDIQCKNRI  120
DTLKKKYKLE KAKFLQSNGR VVSTWPFFAS LDSLIGDSFI KANAPPSGTP PFPVLPPLPS  180
AVPVGPRSKR PAPAQAMGEE AVFRRNFSAM AAAAAAVAED DEDEEESDTS SAAAVGLGSG  240
GMRRKKRRGA AGKVAAEGYR KLAEAIRGFA DIYERVEEAK QRQMVELEKQ RMQFAKDLEI  300
QRMKLFMESQ VQLEKLKRSK RNSQSGDGYL *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027063311.10.0trihelix transcription factor ASIL2-like
TrEMBLA0A068V5U40.0A0A068V5U4_COFCA; Uncharacterized protein
STRINGXP_009760894.11e-113(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.12e-35sequence-specific DNA binding transcription factors