PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g07770
Common NameGSCOC_T00016779001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 272aa    MW: 30579.5 Da    PI: 8.1339
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g07770genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.13.6e-32622021128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyWk 84 
                  lp+G++F+P+d+e++ e+L++kv+++       ++++ + ++   +i+ ++P++Lp  v+++    +fF++ +k+y+tg+rk+r+++      + +W+
  Cc05_g07770  62 LPAGVKFDPSDQEIL-EHLEAKVRSDVhklhplIDEFIHtLEGEnGICCTHPEKLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKVHtdidgcETRWH 157
                  799***********9.99******9995554332222222443336**********.555666688******************755457666788** PP

          NAM  85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  +tgk+++v + kg+++g  k+Lv+y   gr++k+ekt+Wvmh+y+l
  Cc05_g07770 158 KTGKTRPVAV-KGKVKGFEKILVLYtnYGRQRKPEKTNWVMHQYHL 202
                  **********.999***********66589**************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-3757221IPR003441NAC domain
PROSITE profilePS5100532.25462221IPR003441NAC domain
PfamPF023657.5E-1563202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MTCCSDCSNE RTASRRLPTS PDHHDNANNH ESPKSKQMMA CPSCGLTLQS PEKAGIHDLP  60
GLPAGVKFDP SDQEILEHLE AKVRSDVHKL HPLIDEFIHT LEGENGICCT HPEKLPGVSK  120
DGLVRHFFHR PSKAYTTGTR KRRKVHTDID GCETRWHKTG KTRPVAVKGK VKGFEKILVL  180
YTNYGRQRKP EKTNWVMHQY HLGNNEDEKE GELVVSKVFY QTQPRQCGSL IKDSPVKGNG  240
RIGHEGSHLN NSTFVEYYNS ALISFDQCEE V*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027063497.10.0NAC domain-containing protein 73-like isoform X1
RefseqXP_027127681.10.0NAC domain-containing protein 73-like isoform X1
RefseqXP_027157074.10.0NAC domain-containing protein 73-like
RefseqXP_027172549.10.0NAC domain-containing protein 73-like
SwissprotO494591e-116NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A068V5D40.0A0A068V5D4_COFCA; Uncharacterized protein
STRINGXP_002517849.11e-135(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-118NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]