PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc05_g07320 | ||||||||
Common Name | GSCOC_T00042259001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 225aa MW: 25493 Da PI: 6.529 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.2 | 8.4e-10 | 15 | 62 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 ++E++RR+++++ +++L l+P++ +sk l+ + +A++YIks+ Cc05_g07320 15 RRIVEKNRRSHMKDLYARLYGLVPSD---SSKEnLTVPDQIDEAINYIKSM 62 5799*********************7...55555***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.83E-11 | 9 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.376 | 10 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.37E-5 | 12 | 62 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-11 | 13 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-6 | 15 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MERFHPSTSN PKMERRIVEK NRRSHMKDLY ARLYGLVPSD SSKENLTVPD QIDEAINYIK 60 SMEKKLEKCK EKKEKLLFGK RPYSGATGET TKITNVEVHD MGPNLDVILL NGLEEQASFY 120 GIIRLLCKEG FEVVNANFSS NGNSVLQVVH DKGGISTSRT ETTAVAKRLK ELIYGYSRGE 180 VESRLDSWVE SRLGPWDFEI EPDILNSNVL ELMSPGQFCF LQQL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027063507.1 | 1e-166 | transcription factor bHLH162-like | ||||
TrEMBL | A0A068V1Z5 | 1e-165 | A0A068V1Z5_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5297 | 14 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 2e-19 | bHLH family protein |