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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cc05_g06840 |
Common Name | GSCOC_T00042199001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family |
ERF |
Protein Properties |
Length: 494aa MW: 55226.7 Da PI: 5.5543 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc05_g06840 | genome | CGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 59.9 | 5.8e-19 | 249 | 299 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+ge
Cc05_g06840 249 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 299
59******9.**********955...5**************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009651 | Biological Process | response to salt stress |
GO:2000070 | Biological Process | regulation of response to water deprivation |
GO:0005634 | Cellular Component | nucleus |
GO:0005737 | Cellular Component | cytoplasm |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 494 aa
Download sequence Send
to blast |
MNIFVSMASP KNSGKSKKYV EESQHLAGME WDRDRRGQGI REFDLSLERQ QQWRPVFDEA 60 SMENRPFKKI KSPERQDPFH QSSSSLAQQT SQPSLSLTPP YDSRGSNPLA FPSPSPSSSS 120 SRHVFPFAFD GTQQSLESLQ HLRAHTFDRN QQNTVPLFHP LQQNEQQMIS FAPHYHHHQQ 180 QQQQGFAFPP YFAGDAAAGS QHQQQQLLQY WSDALSPRGR MMMMNRLGQG QDPRTLFRPP 240 IQPINTTKLY RGVRQRHWGK WVAEIRLPRN RTRLWLGTFD TAEDAALAYD REAFKLRGEN 300 ARLNFPELFL GKEKAESSSV AGPDSSASDP PTPHDNSASR SGDQPQQPDQ APEGLNMDVY 360 IPELPAAALM GDNPDDDSGL GSSEVTASDE VPAFAESSSA AAEGALHPQS SELVWGEMAD 420 AWFNSIPAGW GPGSPVWDDL DSSNNLMLPP DLPFVNLHQQ SSHDSDSQRQ LDNAASSSST 480 SYPVRPFFWK DRE*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU532310 | 3e-44 | EU532310.1 Gossypium barbadense clone I11-12 ISSR marker genomic sequence. |