PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc05_g05740 | ||||||||
Common Name | GSCOC_T00035151001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 267aa MW: 30150.4 Da PI: 8.4616 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49 | 1.4e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l +v+++G +W+ ++ g+ R++k+c++rw +yl Cc05_g05740 14 KGTWTPEEDRKLTAYVTRYGCWNWRQLPKFAGLSRCGKSCRLRWMNYL 61 799*****************99************************97 PP | |||||||
2 | Myb_DNA-binding | 60.9 | 2.7e-19 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eEdel++++++ lG++ W++Ia++++ gRt++++k++w++ Cc05_g05740 67 RGNYTKEEDELIIKLHESLGNR-WSAIAAHLP-GRTDNEIKNHWHTT 111 899*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.753 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.99E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.26E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.827 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-18 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-17 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-27 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.84E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MVRTPCCDKS GLRKGTWTPE EDRKLTAYVT RYGCWNWRQL PKFAGLSRCG KSCRLRWMNY 60 LRPNLKRGNY TKEEDELIIK LHESLGNRWS AIAAHLPGRT DNEIKNHWHT TLNKSTKQES 120 RSGEPKRSSK SRSNREKNIR KRRKEEQENA PANPVTQEIL ESSQISSQPS PSPSSSLSSP 180 SSDHQLSSSN STTTTSDIHA PDSSNSLAGF SDIIAELAAE SGGTFWTEPF VTDYCNIAYY 240 PPSPFTSEAL LCSYDYYDDN VNTLLW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-29 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 144 | RKRRKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027063832.1 | 0.0 | transcription factor MYB4-like | ||||
TrEMBL | A0A068UTW6 | 0.0 | A0A068UTW6_COFCA; Uncharacterized protein | ||||
STRING | cassava4.1_032937m | 7e-86 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 1e-56 | myb domain protein 15 |