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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cc05_g04050 |
Common Name | GSCOC_T00031585001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family |
C3H |
Protein Properties |
Length: 325aa MW: 36709.8 Da PI: 7.0979 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc05_g04050 | genome | CGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 37.7 | 3.4e-12 | 187 | 212 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
y +C+++ +tG+C yGd CkF+H+
Cc05_g04050 187 YQPDICKDYKETGYCGYGDACKFMHD 212
67789********************7 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SuperFamily | SSF90229 | 3.14E-9 | 185 | 217 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.577 | 186 | 214 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-7 | 186 | 213 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-12 | 187 | 217 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.8E-10 | 187 | 212 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 2.3E-13 | 246 | 305 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 4.62E-13 | 251 | 306 | No hit | No description |
Pfam | PF13920 | 1.6E-8 | 263 | 305 | No hit | No description |
PROSITE profile | PS50089 | 10.409 | 264 | 302 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 1.50E-8 | 264 | 305 | No hit | No description |
SMART | SM00184 | 1.8E-4 | 264 | 301 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 279 | 288 | IPR017907 | Zinc finger, RING-type, conserved site |
Sequence ? help Back to Top |
Protein Sequence Length: 325 aa
Download sequence Send
to blast |
MADSGEAPQQ KQEVCNFFKK PSKGKNIRKR PAVDEDNADE DSKDESSVIF NKKKPAAADN 60 KLHFSTGSSK RSIEAETNAD SKTPFFHFES SKEIQVHNDS RATATLETET EFSRDARAIR 120 ERVLKQAEEA LQGKGTSDEK VYKGMHGYTD YKAGFRREHT VSGEKAGGSH GPLRASAHIR 180 VSARFDYQPD ICKDYKETGY CGYGDACKFM HDRGDYKSGW QLEKEWDEAE KIRKRNLALG 240 IDNADEDTAE KSDEDEDDAL PFACFICRQP FVDPVVTKCK HYFCEHCALK HHARNKKCFV 300 CNQPTMGIFN TAFEIRKRMS AEGK*
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