PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 175aa MW: 19302.4 Da PI: 10.7654

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc05_g02170	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.0004	51	73	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F++ L H +H Cc05_g02170 51 FECKTCNKKFPTFQALGGHRASH 73 89**********99999998887 PP
2	zf-C2H2	12.3	0.00052	96	118	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cg F+ L H+r+H Cc05_g02170 96 HECPFCGLEFPLGQALGGHMRRH 118 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.99E-9	49	118	No hit	No description
Pfam	PF13912	2.5E-12	50	75	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.806	51	78	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.098	51	73	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	53	73	IPR007087	Zinc finger, C2H2
Pfam	PF13912	5.0E-9	96	120	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.072	96	118	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	98	118	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MTVKRSREEA LAAETVEETA AINLLMLLSR VGEATTSAAA DQAATPSGRV FECKTCNKKF 60 PTFQALGGHR ASHKKLKLMA ELLTQPSNSP RKPKKHECPF CGLEFPLGQA LGGHMRRHRA 120 AILEGRREID ESRGRKVAVP VLKRSNSSKR VFGLDLNLSP FENDLRQLMK DPLR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027063234.1	1e-121	zinc finger protein ZAT8-like
Refseq	XP_027175180.1	1e-118	zinc finger protein ZAT1
TrEMBL	A0A068V721	1e-123	A0A068V721_COFCA; Uncharacterized protein
STRING	XP_010043581.1	1e-52	(Eucalyptus grandis)
STRING	XP_010043584.1	9e-53	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA366	24	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	4e-35	C2H2 family protein