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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc05_g01990 | ||||||||
Common Name | GSCOC_T00040825001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | CO-like | ||||||||
Protein Properties | Length: 413aa MW: 44877.3 Da PI: 5.3138 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.9 | 6.5e-06 | 46 | 88 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +C++++ +++ C + + lC++C +H g H+++ Cc05_g01990 46 LVCERCNLQPAFVRCIEEKISLCPNCDWLGHGGsntgstHKRQ 88 68*****************************558888888875 PP | |||||||
2 | CCT | 63 | 9e-22 | 355 | 398 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+ktRkFeKk+rY+sRKa+A+ R RvKGrFvk+ Cc05_g01990 355 RSNAVMRYKEKKKTRKFEKKVRYASRKARADVRRRVKGRFVKAG 398 899**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.371 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.11E-6 | 4 | 47 | No hit | No description |
SMART | SM00336 | 1.8E-6 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.398 | 355 | 397 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.8E-16 | 355 | 397 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MGYMCDFCGE QRSIVYCRSD AASLCLSCDC NVHSANALSR RHSRTLVCER CNLQPAFVRC 60 IEEKISLCPN CDWLGHGGSN TGSTHKRQAV SCYSGCPSAA ELSTIWPFFL DFPLVGDSKC 120 EQIMGSMSIN EVSRDSQGAQ GKKNIQDASV AVGVTNIQNV DKSTAWTGSS MLPYDAKLQN 180 IELPAASTCA GSPKLSCFGA KGQTVCEDDS FYENFNMDEV DLSIENYDEL FGAALDNPEK 240 LFENDDIDGL FGMEISGADS NCQDAHLMEG SSMGRINGIQ PACSTAASAD SMMSCKTEPN 300 ICFARQAHSS LSFSGLTGES SAGDYQDCGA SSFLLMGEPP WCPPCPESSN PASSRSNAVM 360 RYKEKKKTRK FEKKVRYASR KARADVRRRV KGRFVKAGDA YDYDPMTPTR SY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027064634.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like isoform X1 | ||||
Swissprot | Q9SSE5 | 1e-144 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A068V174 | 0.0 | A0A068V174_COFCA; Uncharacterized protein | ||||
STRING | XP_009768363.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1270 | 24 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 1e-119 | B-box type zinc finger protein with CCT domain |