PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc05_g00410 | ||||||||
Common Name | GSCOC_T00017074001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | NF-YB | ||||||||
Protein Properties | Length: 257aa MW: 28723.2 Da PI: 7.2629 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 121.7 | 3.1e-38 | 51 | 141 | 7 | 97 |
NF-YB 7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 ++Pi+n+ rimk++lP nak+s++ k t+qec se+i f+t+e +++c+ e+rkti+++dll+a a lGf +yv pl+++l++yr+ e++k Cc05_g00410 51 LVPITNLLRIMKRILPPNAKVSEEVKTTIQECLSEYIHFITGEVNERCHCEQRKTITAEDLLYAYARLGFSNYVGPLTLFLERYRQNEAAK 141 58***********************************************************************************999765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 9.89E-27 | 50 | 145 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.9E-34 | 51 | 142 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.1E-18 | 52 | 114 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 6.1E-11 | 79 | 97 | No hit | No description |
PRINTS | PR00615 | 6.1E-11 | 98 | 116 | No hit | No description |
PRINTS | PR00615 | 6.1E-11 | 117 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MTKIYGFNVN FSFSDSRTRR CCNPSASGSN VNNNNNSGTP EPYPRLHPGY LVPITNLLRI 60 MKRILPPNAK VSEEVKTTIQ ECLSEYIHFI TGEVNERCHC EQRKTITAED LLYAYARLGF 120 SNYVGPLTLF LERYRQNEAA KNIIHGDASV RRTTYFPDAQ GPPPLLTSTP PLLPLMNLTF 180 QVGEDHQGFF INPALMLNDL YFQNVRETDH GDRFDVVGSS SNPDFPALAP FSYGFHTRAS 240 SPPGSYTYGH GPNHGQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 3e-37 | 51 | 136 | 12 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027064455.1 | 0.0 | nuclear transcription factor Y subunit beta-like | ||||
TrEMBL | A0A068V5L4 | 0.0 | A0A068V5L4_COFCA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 7e-39 | nuclear factor Y, subunit B6 |