PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g00300
Common NameGSCOC_T00017057001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 525aa    MW: 57603.8 Da    PI: 6.8692
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g00300genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.92.7e-16346392455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN+++  L+ellPk+      K +Ka++L +A+eY+ksLq
  Cc05_g00300 346 VHNLSERRRRDRINEKMRALQELLPKS-----NKTDKASMLDEAIEYMKSLQ 392
                  6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-20339406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.114342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.87E-18345396No hitNo description
PfamPF000108.7E-14346392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-19346400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-17348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MNPCFPDWNF GVEFPEPILK NKPLGMDNEL VELLWENGQI VLHPQSHHHH HPKPGTADQQ  60
ENQSRQVDKH NHDQSVSRGS TGGGSCQNQV TSLIQDTETV SWIDDPFDKE FTSDFLSEFP  120
ISNPVEQGPH EDDKFKKFGI SQDLHNHPVQ LPNDKPSDVI NSLPPGFHNF DSAQPNHSHL  180
PRAANAPLSA KADLRSSSDG VSNRTLGGEA REYSSAKTVG TSHCGSNLVV NDTDTSRVSS  240
GGIANHRGFS GAMAKDHRVG KMSSQSDGLQ TDQTEETAIT SSSSDGSETS FGRTCNQSTG  300
TNSHKRKSRD AEDSECQSKA AELESAARKK PAVKSGSSRK SRAAEVHNLS ERRRRDRINE  360
KMRALQELLP KSNKTDKASM LDEAIEYMKS LQLQLQMMWM GSGMAPMMFP GVQHYMPRLG  420
MGIGPLAMPS IHSQMHLPRL PLLDQATIPN QAALCHQTTM FNPMNYHAQM QNSKLSEQYA  480
NYMAFHPLQN ASQQLNVFGF GSNTAQQHNH SLAPSGNSNG PSVG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1350355ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027064137.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
RefseqXP_027064138.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
TrEMBLA0A068V6A10.0A0A068V6A1_COFCA; Uncharacterized protein
STRINGXP_009757612.11e-153(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA104652226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.32e-43phytochrome interacting factor 3-like 5