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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc04_g16930 | ||||||||
Common Name | GSCOC_T00035813001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 249aa MW: 27277.4 Da PI: 4.7564 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.3 | 3.6e-05 | 39 | 88 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r + erE+ R+++N+ f L l + + + Ka++L +A++++k++ Cc04_g16930 39 KRIHKAEREKMKREHLNDLFLSLANALEVS----EETNGKASVLSEAIRFVKDM 88 688899*********************998....67899999*******99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.14E-11 | 36 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.53E-5 | 36 | 93 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.6E-8 | 38 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.429 | 38 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MSMSSEESPE STLEPVSRVV QTPTTKCQSG RKHQGKVPKR IHKAEREKMK REHLNDLFLS 60 LANALEVSEE TNGKASVLSE AIRFVKDMLA QIESLRSENA ALSSESQYMT MEKEELQDET 120 NSLESQIAEL QNQVRERVGE AELDLNATPG GQFDGSTPHQ VDDCFRFPAL GPAIQQPQNV 180 KPVYVIPLCS DPSVFQQPGN AETASSPLTT VSKPQARYPT PADTWTSQLL EKHPDLGGGD 240 EHCGGRSC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027121478.1 | 0.0 | transcription factor bHLH47-like | ||||
Refseq | XP_027121479.1 | 0.0 | transcription factor bHLH47-like | ||||
TrEMBL | A0A068UV95 | 0.0 | A0A068UV95_COFCA; Uncharacterized protein | ||||
STRING | XP_009798054.1 | 7e-76 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4307 | 19 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 2e-51 | bHLH family protein |