PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 297aa MW: 32796.9 Da PI: 6.7806

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc04_g16640	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.3	1.5e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl Cc04_g16640 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	49.8	8.1e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Cc04_g16640 67 RGNFTEHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.347	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	9.58E-31	11	108	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.8E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	4.52E-12	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.9E-25	65	117	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.609	66	116	IPR017930	Myb domain
SMART	SM00717	1.5E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-14	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	2.11E-11	69	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKLQ 120 GHDDHSCQDG HSSTSHESIS KVLTLNPSFT NPPLKPSGYA SSTENIARLL QNWMKKSPKS 180 LAVVSETCTA QSLSCYSDNN PSGGLDSLLS FNSTTNSDVS QGQSVSVEEV ANFRPENTVG 240 GLFQDDENKP NLVVGSHQMP PLSFLEKWLL DDAGAVQGQE GIDLMDMSLG ETADLF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	8e-26	14	116	4	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	3e-25	14	116	58	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	3e-25	14	116	58	159	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	1e-25	14	116	27	128	MYB TRANSFORMING PROTEIN
1mse_C	8e-26	14	116	4	105	C-Myb DNA-Binding Domain
1msf_C	8e-26	14	116	4	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027123691.1	0.0	myb-related protein 306-like
Refseq	XP_027126482.1	0.0	myb-related protein 306-like
Swissprot	P81392	1e-110	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A068UVI7	0.0	A0A068UVI7_COFCA; Uncharacterized protein
STRING	XP_009594207.1	1e-114	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	1e-91	myb domain protein 60

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]