PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g16420
Common NameGSCOC_T00035737001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 427aa    MW: 48343.6 Da    PI: 5.3637
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g16420genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF741.2e-23953145
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 kr e++snrqvt+skRr gilKKA+E+SvLCd+++ +++fs++gk
  Cc04_g16420  9 KRLESNSNRQVTYSKRRSGILKKAKEISVLCDIDIMLLMFSPNGK 53
                 689****************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.637161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-31160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-27295IPR002100Transcription factor, MADS-box
CDDcd002667.07E-27282No hitNo description
PRINTSPR004041.7E-19323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-201155IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MGRVKLKIKR LESNSNRQVT YSKRRSGILK KAKEISVLCD IDIMLLMFSP NGKPTIFTGA  60
RSNVDEIISK FAQLSSQERA KRKLESLEVL KKTFKKLDHE INIQEYLDGR CVTMFGESCS  120
QVRVLRAQLT ELHNRLSWWS NPEKVEDIEH LRQMEGSLRE SLTRVRALKE NFVKHQLMPL  180
NYSGQFQSGM QFPMTMDGNQ DGTTLPWIQD NENQPVILSK DSDFITQRDM EYPRDASLPG  240
CSALFTTGKE AEIDNTGLID NINCPRDITL SSCSGLFSNS KVEGTNNTGK MDNMECPRDT  300
SLPSCSGLID RGKETEFHNA EQVDSITQEG SAMDDLSAIS CLRLQLGGEQ PYYPYSHLNI  360
PELNKLEVGR EANFQENPMT YQMNGNFELP RSIYANLGHP WFPASDDCEI NMMNDNPFTQ  420
PSSQHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-15192190MEF2 CHIMERA
6byy_B3e-15192190MEF2 CHIMERA
6byy_C3e-15192190MEF2 CHIMERA
6byy_D3e-15192190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027123664.10.0agamous-like MADS-box protein AGL65 isoform X1
RefseqXP_027123665.10.0agamous-like MADS-box protein AGL65 isoform X1
SwissprotQ7X9I02e-86AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A068UUT50.0A0A068UUT5_COFCA; Uncharacterized protein
STRINGVIT_17s0000g06340.t011e-115(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76402124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.19e-89AGAMOUS-like 65
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]