PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc04_g16420 | ||||||||
Common Name | GSCOC_T00035737001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 427aa MW: 48343.6 Da PI: 5.3637 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74 | 1.2e-23 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRr gilKKA+E+SvLCd+++ +++fs++gk Cc04_g16420 9 KRLESNSNRQVTYSKRRSGILKKAKEISVLCDIDIMLLMFSPNGK 53 689****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.637 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.0E-31 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.58E-27 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 7.07E-27 | 2 | 82 | No hit | No description |
PRINTS | PR00404 | 1.7E-19 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-20 | 11 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-19 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-19 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MGRVKLKIKR LESNSNRQVT YSKRRSGILK KAKEISVLCD IDIMLLMFSP NGKPTIFTGA 60 RSNVDEIISK FAQLSSQERA KRKLESLEVL KKTFKKLDHE INIQEYLDGR CVTMFGESCS 120 QVRVLRAQLT ELHNRLSWWS NPEKVEDIEH LRQMEGSLRE SLTRVRALKE NFVKHQLMPL 180 NYSGQFQSGM QFPMTMDGNQ DGTTLPWIQD NENQPVILSK DSDFITQRDM EYPRDASLPG 240 CSALFTTGKE AEIDNTGLID NINCPRDITL SSCSGLFSNS KVEGTNNTGK MDNMECPRDT 300 SLPSCSGLID RGKETEFHNA EQVDSITQEG SAMDDLSAIS CLRLQLGGEQ PYYPYSHLNI 360 PELNKLEVGR EANFQENPMT YQMNGNFELP RSIYANLGHP WFPASDDCEI NMMNDNPFTQ 420 PSSQHP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_B | 3e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_C | 3e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_D | 3e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027123664.1 | 0.0 | agamous-like MADS-box protein AGL65 isoform X1 | ||||
Refseq | XP_027123665.1 | 0.0 | agamous-like MADS-box protein AGL65 isoform X1 | ||||
Swissprot | Q7X9I0 | 2e-86 | AGL65_ARATH; Agamous-like MADS-box protein AGL65 | ||||
TrEMBL | A0A068UUT5 | 0.0 | A0A068UUT5_COFCA; Uncharacterized protein | ||||
STRING | VIT_17s0000g06340.t01 | 1e-115 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7640 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 9e-89 | AGAMOUS-like 65 |
Publications ? help Back to Top | |||
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