![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cc04_g16290 | ||||||||
Common Name | GSCOC_T00035715001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 356aa MW: 39654.9 Da PI: 8.2947 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173 | 9.2e-54 | 17 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL kkv ++++++ +i evd++kvePwdLp k+k +ekewyfF rdkky+tg r+nrat++gyWkatgkdke+++ +++ Cc04_g16290 17 LPPGFRFHPTDEELITHYLSKKVVDNSFSA-IAIGEVDMNKVEPWDLPWKAKMGEKEWYFFGVRDKKYPTGLRTNRATAKGYWKATGKDKEIFR-GKS 112 79*************************999.88***************888999****************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfykgrapkgekt+Wv he+rle Cc04_g16290 113 LVGMKKTLVFYKGRAPKGEKTNWVTHEFRLE 143 ****************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.15E-60 | 14 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.604 | 17 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-26 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 356 aa Download sequence Send to blast |
MENYSVLVNG DDHQLDLPPG FRFHPTDEEL ITHYLSKKVV DNSFSAIAIG EVDMNKVEPW 60 DLPWKAKMGE KEWYFFGVRD KKYPTGLRTN RATAKGYWKA TGKDKEIFRG KSLVGMKKTL 120 VFYKGRAPKG EKTNWVTHEF RLEGKFSLQN LPKTAKNEWV ICRVFQKTAG GKKIHISGLL 180 RSNSIETEFA PSLLPPLMDS PTYNGASSKP TSWPESGHVH CFSSPFSSAQ NKSLQEDMLL 240 SYFSNPAFAP STSNPLDLGP VQGNYQFPGS IPMQDTSALR TLIESCGQNM LKQSFKTEQQ 300 ERVSASQETG ISTDMNTEIS SVVSNLEMGR KSAVDQEPPS TSVGPQGLVD CLWYS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 9e-54 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 9e-54 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 9e-54 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 9e-54 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 9e-54 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 9e-54 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 9e-54 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 9e-54 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027121699.1 | 0.0 | NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 1e-132 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A068UVF5 | 0.0 | A0A068UVF5_COFCA; Uncharacterized protein | ||||
STRING | cassava4.1_010528m | 1e-163 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-135 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
---|---|---|---|
|