PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g15940
Common NameGSCOC_T00042384001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family LBD
Protein Properties Length: 299aa    MW: 33239 Da    PI: 5.9245
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g15940genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.71.6e-37101111101
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  aCaaCk++rr+C++dC+lapyfpa+qpk f+n+hklFG+sn+lk+l++l +++++  am+s++y++++r + Pv+G++g+i++l  q++ +++el+++
  Cc04_g15940  10 ACAACKYQRRRCTADCPLAPYFPADQPKMFQNAHKLFGVSNILKILRQLdHPSQKLVAMKSIIYQSNIRDKYPVHGCLGIIQQLWYQIQLAEEELQAI 107
                  7************************************************777889*****************************************99 PP

       DUF260  98 keel 101
                  +++l
  Cc04_g15940 108 HAQL 111
                  9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.5399111IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-3610107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MTLKGGTSQA CAACKYQRRR CTADCPLAPY FPADQPKMFQ NAHKLFGVSN ILKILRQLDH  60
PSQKLVAMKS IIYQSNIRDK YPVHGCLGII QQLWYQIQLA EEELQAIHAQ LALYRQHQQQ  120
EVSTGLSDSI SQLHLGMAPP SNALSHFHQD APQNYDNTVS ALPIGSHPTY SSNSANAANY  180
NATYMDSKEN NAVNSLWVQQ PPYNNSSSDI NNSNPMVMQS QLINSQPLII QQDCGTQDYD  240
EMHPFFDTID DRQSYIASKE AYESSSESSL KDTTQSVEHV AENELKSAAA CFSLTSIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-2761267126LOB family transfactor Ramosa2.1
5ly0_B2e-2761267126LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027123818.10.0LOB domain-containing protein 27-like
TrEMBLA0A068V2V30.0A0A068V2V3_COFCA; Uncharacterized protein
STRINGcassava4.1_033210m1e-137(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.12e-56LOB domain-containing protein 27