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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cc04_g15600 |
Common Name | GSCOC_T00042333001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family |
HD-ZIP |
Protein Properties |
Length: 332aa MW: 37511.1 Da PI: 4.6175 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cc04_g15600 | genome | CGSC | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 62 | 8.8e-20 | 96 | 149 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t++q+ Le+ Fe ++++ e+++eLAk+lgL+ rq+ vWFqNrRa++k
Cc04_g15600 96 KKRRLTADQVLFLEKSFEDENKLEPERKAELAKELGLQPRQIAVWFQNRRARWK 149
56789************************************************9 PP
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2 | HD-ZIP_I/II | 129.8 | 1.1e-41 | 95 | 186 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekkrrl+++qv +LE+sFe e+kLeperK+ela+eLglqprq+avWFqnrRAR+ktkqlEkdye+L+++yd+lk++ ++L ke+e+L++e+
Cc04_g15600 95 EKKRRLTADQVLFLEKSFEDENKLEPERKAELAKELGLQPRQIAVWFQNRRARWKTKQLEKDYETLQASYDKLKADYDNLLKEKEQLKAEVV 186
69**************************************************************************************9986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 332 aa
Download sequence Send
to blast |
MAGRTLVYGQ GGAGGTSNLS SFLLQNQRVG CSSSSQPHHD SLFISSSSPS FLGSRSMVSF 60 EDVNGRKRSN NSFYHSYDQE ERVDEELEEY FRQPEKKRRL TADQVLFLEK SFEDENKLEP 120 ERKAELAKEL GLQPRQIAVW FQNRRARWKT KQLEKDYETL QASYDKLKAD YDNLLKEKEQ 180 LKAEVVHITE KLLIKEKENE NSKLSHSSSL SAAPAKGSTA DSACEDEVSK VSAVALKQED 240 LSSAKSDVLD SDSPHYTDGV HSSLLEPGDS SYALEQDQSD LSQDEEDDIT KTLMHPAYLF 300 LKMEDSDYHD PQSSCYYGFP VEDQAFGFWS Y*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 143 | 151 | RRARWKTKQ |