PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g13700
Common NameGSCOC_T00035872001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 182aa    MW: 20757.2 Da    PI: 10.5069
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g13700genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.95e-101565554
                 HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                  + +Er+RR r++  ++eL +l+P+  +k++++ l+  +   ++v YI +L
  Cc04_g13700 15 RKTIERNRRIRMKGLISELASLVPPqHFKPSKEMLNQKDQIDQVVTYIMQL 65
                 678**********************777766666***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.02E-4870No hitNo description
Gene3DG3DSA:4.10.280.101.3E-91070IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.24E-91085IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.0231065IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-71665IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MENNCSNDAP RKLDRKTIER NRRIRMKGLI SELASLVPPQ HFKPSKEMLN QKDQIDQVVT  60
YIMQLKERVE KLNKRKEMLK SEHQTKGTNP RNSAIPSSRI PVLKIMESDS SLEVVLVTGL  120
RKNFALHEVI QVLHGQGLEV VSVSISTIEE KIYHILHAQV KVPRLGADTL TIYGRLQKLF  180
N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027122154.11e-129transcription factor bHLH162-like
TrEMBLA0A068UVP51e-129A0A068UVP5_COFCA; Uncharacterized protein
STRINGXP_004298935.11e-55(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60831423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.15e-24bHLH family protein