PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g12140
Common NameGSCOC_T00005260001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 650aa    MW: 72914.5 Da    PI: 5.3629
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g12140genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.6e-13391435655
                  HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   ++Er+RR+++N+++  Lr l+Pk +      Kl+ a+iL  A+eY+k+Lq
  Cc04_g12140 391 LMAERKRRKKLNDRLYALRALVPKiS------KLDRASILGDAIEYVKELQ 435
                  589*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-1156201IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.57E-14384439No hitNo description
PROSITE profilePS5088816.228385434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-17388448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-11390435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-16391440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-17392448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MGLWCCVLCF ILISCSFLLV SSLCCSVKSS SAKDNLSKTK QSTWTGNMNL VQNFTERLRP  60
ILGLKSWDYF AIWRLAEDQR SLELVDCCCA GTENIHSGEE LFPLSPSLPC RDVIYQHPRT  120
KACDLLAQLP SSIPLDSGCG MYGETLMSNQ ARWLNFSPNV DSSLSGNSMG TRVLTPVPGG  180
LVEFYVAKQV PEDQEIIEFI TAQCNISLEQ QSIFIHADTI HSSFSANVDG LHAVEGSDGK  240
ASCKIFSSPV NPSTGKQTLE LPSDVSMDQI HLNHSPLNIA QAFSYISDNA GSKNDTMFYE  300
GTHELNTFTS SMENGIQDME AALQKHMMSQ SGNMLMQMME PLPNKEDQGN ENDSYKQENG  360
PSNSVSDSDP NDDEDDAKYR RRTEKGQSKN LMAERKRRKK LNDRLYALRA LVPKISKLDR  420
ASILGDAIEY VKELQKQVKD LQDELEENSD DEDPRNSGIT NNPNILPPNV FQGNGMNFGV  480
YKSEHETTSN GYHKRISGNG GTDLSSQEPE NIDDKVQQME PQVEVTQLDG NEFFVKVFCE  540
HKPGGFVRLM EALNSIGLEV NNVNATRHTC LVSYIFKVER KDSEMLQADH VRESLLELTR  600
NPSRGWSDMA KASENEDKMD LYQLHHHHHH HSRLHNHQIN SHHLQHLHN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1379399RRRTEKGQSKNLMAERKRRKK
2393400ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027122062.10.0transcription factor ABORTED MICROSPORES-like
TrEMBLA0A068V8D30.0A0A068V8D3_COFCA; Uncharacterized protein
STRINGPOPTR_0009s13860.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA96722227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-134bHLH family protein