PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 207aa MW: 23403.2 Da PI: 7.5053

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc04_g11990	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	40.3	5.4e-13	83	142	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC......TS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl......gLterqVkvWFqNrRakek 56 ++ ++tk q Lee F+++++++ + L+ +l +L rqV vWFqNrRa+ k Cc04_g11990 83 NKLCLTKAQSALLEESFKQHSTLNPITSLSLSFSLylarelNLRPRQVEVWFQNRRARTK 142 56789***********99998887777666555555555***************98 PP
2	HD-ZIP_I/II	105.6	3.8e-34	83	177	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKve......lareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +k+ l+k q++lLEesF+++++L+p + lareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk++y++l++en+rLeke +eL+ +l Cc04_g11990 83 NKLCLTKAQSALLEESFKQHSTLNPITSLSlsfslyLARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLEKELQELK-AL 177 6899*******************8865422222279****************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.13E-13	68	145	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.6E-13	76	147	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.88	78	144	IPR001356	Homeobox domain
SMART	SM00389	4.3E-10	80	148	IPR001356	Homeobox domain
CDD	cd00086	1.16E-8	82	145	No hit	No description
Pfam	PF00046	1.4E-10	83	142	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	119	142	IPR017970	Homeobox, conserved site
Pfam	PF02183	5.2E-10	144	178	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	2.6E-23	144	187	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MSNSAATIDK CFLLPLSHSA NKASNNEPPL SAADLHRQDS AASSFSNNSV KRERELGSSE 60 EVEIETVSSR VSDEDDDGSN GRNKLCLTKA QSALLEESFK QHSTLNPITS LSLSFSLYLA 120 RELNLRPRQV EVWFQNRRAR TKLKQTEVDC EFLKKCYETL TDENRRLEKE LQELKALKLA 180 QPLYMHAIAN GYTDHVPFLR KGRQSW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	144	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027075542.1	7e-88	homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	2e-55	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A068UWJ6	1e-149	A0A068UWJ6_COFCA; Uncharacterized protein
STRING	VIT_00s0732g00010.t01	8e-75	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22800.1	1e-43	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]