PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc04_g08940 | ||||||||
Common Name | GSCOC_T00022770001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 715aa MW: 78691.6 Da PI: 6.76 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.6 | 2.9e-20 | 25 | 80 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le++F+++++p++++r +L+++lgL rq+k+WFqNrR+++k Cc04_g08940 25 KKRYHRHTAHQIQRLESMFKECPHPDEKTRLQLSRELGLAPRQIKFWFQNRRTQMK 80 688999***********************************************998 PP | |||||||
2 | START | 178.3 | 4.6e-56 | 223 | 447 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 +a a++el+++ + +ep+W+ks+ e +n + + ++f+++++ ++ea+r+sgvv+m+ lv ++d + +W e ++ +a tlevi Cc04_g08940 223 IAGNAMDELIRLLQTNEPLWMKSPvdgrEVLNLESYERIFPRANThlrspnIRIEASRDSGVVIMNGLALVDMFMDAN-KWVELFPtivsRARTLEVI 319 67899**********************999************999*****99**************************.******99999******** PP CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS START 86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176 ssg g+lqlm+ el +lsp vp R +f+R+++q ++g+w+ivdvS d +q+++ +s + ++lpSg+li++++ng+skvtwveh + +++ Cc04_g08940 320 SSGilgsqsGTLQLMYEELHVLSPFVPpRQLYFLRFCQQIEQGSWAIVDVSYDIPQENQ-FASPCKTHRLPSGCLIQDMPNGYSKVTWVEHLEIEEKA 416 **********************************************************9.79999********************************* PP X.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 177 p.hwllrslvksglaegaktwvatlqrqcek 206 p h l+r l++sgla+ga +w+atlqr ce+ Cc04_g08940 417 PvHRLFRDLIHSGLAFGAERWLATLQRMCER 447 *****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.1E-21 | 5 | 82 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-22 | 12 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.783 | 22 | 82 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-19 | 23 | 86 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.56E-19 | 24 | 83 | No hit | No description |
Pfam | PF00046 | 9.0E-18 | 25 | 80 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 57 | 80 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 50.895 | 213 | 450 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.95E-36 | 214 | 448 | No hit | No description |
CDD | cd08875 | 1.85E-120 | 217 | 446 | No hit | No description |
SMART | SM00234 | 2.9E-45 | 222 | 447 | IPR002913 | START domain |
Pfam | PF01852 | 4.4E-48 | 223 | 447 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.1E-6 | 290 | 446 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 3.7E-22 | 469 | 703 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 715 aa Download sequence Send to blast |
MDYASGGSGS GGDHHHHHDA SGRRKKRYHR HTAHQIQRLE SMFKECPHPD EKTRLQLSRE 60 LGLAPRQIKF WFQNRRTQMK AQHERADNCA LRAENDKIRC ENIAIREALK NVICPSCGGP 120 PVGEDSYFDE QKLRMENAQL KEELDRVSSI AAKYIGRPIS QLPPVQPIHI SSLDLSMSSF 180 GGGGMVGPSL DLDLLPGSSS TMPGLPFPAM SISDMDKSLM ADIAGNAMDE LIRLLQTNEP 240 LWMKSPVDGR EVLNLESYER IFPRANTHLR SPNIRIEASR DSGVVIMNGL ALVDMFMDAN 300 KWVELFPTIV SRARTLEVIS SGILGSQSGT LQLMYEELHV LSPFVPPRQL YFLRFCQQIE 360 QGSWAIVDVS YDIPQENQFA SPCKTHRLPS GCLIQDMPNG YSKVTWVEHL EIEEKAPVHR 420 LFRDLIHSGL AFGAERWLAT LQRMCERFAC LMVTGNSTRD LGGVIPSAEG KRSMMKLAQR 480 MVSSFCQSIN PSNGHQWTTL SGLNEFEVRA TLHKCTDPGQ PNGVVLSAAT TIWLPIPPQN 540 VFDFFRDERT RHQWDVLSNQ APVQEVAHIA NGSHPGNCIS VLRAFNTNQN NMLILQESCI 600 DASGSLVVFG PVDLPAINIA MSGEDPSYIP LLPSGFTITP DGRPGNQQQI QAAGGDGAST 660 SGAGGSLITV VFQILVSSLP SAKMSPESVN TVNNLIGTTV HQIKAALNCS TTTS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027169263.1 | 0.0 | homeobox-leucine zipper protein HDG11-like | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A068TTE0 | 0.0 | A0A068TTE0_COFCA; Uncharacterized protein | ||||
STRING | XP_010099679.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2490 | 23 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |