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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc04_g08190 | ||||||||
Common Name | GSCOC_T00022672001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 564aa MW: 61524.3 Da PI: 7.1908 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.3 | 3.7e-15 | 261 | 312 | 2 | 55 |
HHHHHHHHHHHHHHHHHH..HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa..feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++ f++Lre++P++ ++K +Ka+ L +++eYI+ Lq Cc04_g08190 261 RSKHSATEQRRRSKINDRhvFQKLREIIPHS----DQKRDKASFLLEVIEYIQFLQ 312 889**************9779*********9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 6.0E-21 | 256 | 330 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-15 | 257 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.592 | 259 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-12 | 261 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.44E-14 | 261 | 316 | No hit | No description |
SMART | SM00353 | 1.6E-9 | 265 | 317 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 564 aa Download sequence Send to blast |
MELRQPRPFG TEGRKTTHDF LSLYSPVQQD PRPPQGGFLK TQDFLQPLEQ GCKNVAKEED 60 KVEINDLEKP PPAAPPSNIE HLLPGGIGTY SITYFNQRFL KPEGNVYMMA QASSTNINDE 120 NSNCSSYAGG GFTLWDESAV KKGKTGKENN AGDRAVLKEA EANVGAGQWR ASAERPSQSS 180 SNHKLNAATF SSLSTSKPSL AQRNQSFVNM ITSAKSFQEE DDDDDDEEEF VIKKEPSSHP 240 KGNLSVKVDG KSTDQKPSTP RSKHSATEQR RRSKINDRHV FQKLREIIPH SDQKRDKASF 300 LLEVIEYIQF LQDKVQKYEG PYPGWNQELS KPMPSRNLRG PEDFINSTQV TNIGSNPLIH 360 AAKLNESKVT SSSALAINGQ HLESDVSSAA AFGEKDHQPD ITDKAASVPM ALRHGIFPFG 420 GTSTASVPLS SMPASDIDKT TSHPQHQFWP RGSCTADSNI TDKLKDQLTI ESGTISISSI 480 YSQGLLSTLT QALQSSGIDL SQANISVQID LGKRANGRVN SSASVIKDVD VPSCNQAMPR 540 SIVTRAGEDS PGQALKRLKT SRS* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00498 | DAP | Transfer from AT5G08130 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027123148.1 | 0.0 | transcription factor BIM1-like isoform X1 | ||||
Refseq | XP_027123149.1 | 0.0 | transcription factor BIM1-like isoform X1 | ||||
TrEMBL | A0A068TT57 | 0.0 | A0A068TT57_COFCA; Uncharacterized protein | ||||
STRING | Solyc03g114720.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3969 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.4 | 1e-85 | bHLH family protein |